Desulfurella acetivorans: DESACE_05895
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Entry
DESACE_05895 CDS
T03007
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dav
Desulfurella acetivorans
Pathway
dav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DESACE_05895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dav03400
]
DESACE_05895
Enzymes [BR:
dav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DESACE_05895
DNA repair and recombination proteins [BR:
dav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DESACE_05895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Cas3-like_C_2
SNF2-rel_dom
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHF97195
LinkDB
All DBs
Position
complement(1120842..1123904)
Genome browser
AA seq
1020 aa
AA seq
DB search
MYYNFALLSYLAYQTISQKNILIVLNDNFEAKTFYESLIFFKEYYKKDVYINFFEAYSIG
AHSSIAPSSQTIRMRLKTLAELKSIDRNHFLVASQEALMQPTIKEESFLLNSIKRNQSLN
RKEFIELLVNLYYDPTSNVEDIGQYCIRGSLVDCFVPIYEKPLRIDFFGDTIDDIRMFYC
YNQRTHSKIDKACITYAKEYNFAEDEYGFSLIGENIRGYLLDYKKVKELTKYCYFDERTS
ELSFKRTKSDDSIYDLRILKEKTIDYMNFINEFETIFASNIPTPQKLDFLIELSRSMKVV
IACASDFRVDKLKNILQSKGARIVTDDEYGIYLSNGYLKKGFRTSKIAFVSFEEIFGVAV
QKDQELSPKMHLVQFQKDKLIAHKNYGIGIYRGIKTLKVEDALMDFFEIEYANQDKVYVP
VTNADCLFEYSGTAQIDSLNSKSWHIKKENAQKAIKKILTELVNVYAKRKILTRAPYDTD
LIEIKEFEAEFEYQETQDQLQAIEDVKNDMRSNTPMERLICGDVSFGKTEVAMRACAIAC
FNSRQCIVISPTTILSMQHYSTFTDRFANFPVKIALLNSFTKKSDREKIKSGLEDGSIDI
LISTHSVYFADINFRNLGLVIIDEEQHFGVKIKEHFKQKYETVDMLYLSATPIPRTLNMA
INSIFGISVIKTPPLSRKRIQTYVIKQTDKIIKEAIERELSRDGSVFFVHNRIETIYEVK
DSLDKLVPEYEKHIIHSKLPKNEIKKIITDFVNRKFPILISTSIIESGLDLKHVNTIIIS
QAQNFGLSDLYQLRGRVGRSDIEAFAYLLYDGPLSEQASMRLITLKEYMERGVGFNIALK
DLEIRGAGNVFGKDQSGNLKAIGHDLYVELMQEALSQISNENLEREVEIKFIDNMYIPDW
YIDNEKTAIYTLISKAKSEEELNDIKTYIEDRYGKIPKIVLRLIEISIIKLYAKKAFVKS
LIFGKKGVSVQFYIDAKIDTDKLIKQVNILKGKFLSETMVFLNIDKDNLNVLKNFLINIV
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgtattataattttgcattactgtcttatcttgcttatcaaaccatttctcaaaaaaat
attttaattgtgttaaatgacaattttgaagcaaaaactttttatgaatcgttaattttt
tttaaagaatattacaaaaaagatgtatatataaatttttttgaagcttacagtattggt
gcacactccagtattgctccatcaagtcaaactataagaatgcgtttaaaaacattggct
gagcttaaaagcatagatagaaatcattttttagttgcaagccaagaagcattaatgcag
ccaactataaaagaagaaagttttctgttaaattcaattaagagaaatcaaagcctaaac
agaaaagaatttattgagcttttggtaaatttatattacgatcctacatcaaacgttgaa
gatataggtcaatattgtatacgtggtagtttggtggattgttttgtaccaatttatgag
aaacctttaagaatagatttttttggtgatacaattgatgatataagaatgttttattgt
tataaccaaagaactcactcaaaaatagacaaagcctgtattacatatgcaaaagaatac
aactttgctgaagatgaatacggtttttcgcttattggagaaaatataagaggttatctt
ttggattataaaaaggttaaagaacttactaaatactgctactttgatgagcgtacaagc
gagctttctttcaaacgtacaaaatccgatgatagtatttatgatttgaggatactcaaa
gaaaaaacaatagattatatgaattttataaatgagtttgaaaccatttttgcatcaaat
atcccaacccctcaaaaattagattttcttatagaactttcaagatcaatgaaggttgta
attgcatgcgcaagtgattttcgtgttgataagttaaaaaacatacttcaatcaaaaggt
gccagaattgttacagacgatgagtatggtatttacttaagcaatggatatctgaaaaaa
ggttttagaacaagcaaaatagcctttgttagtttcgaagagatatttggcgtagcagtt
caaaaagaccaggagctttctccaaagatgcatctagttcaatttcaaaaggataagctt
attgctcataaaaattatggtataggaatatatagaggtattaaaacattaaaagtagaa
gatgctttaatggatttttttgaaattgaatatgcaaatcaagataaagtttatgtgcct
gtaacaaacgctgattgtttatttgaatacagtggaacagcccaaattgattctttaaac
tcaaaatcatggcatataaaaaaagaaaatgcacaaaaagccataaagaaaatacttaca
gaacttgtaaatgtctatgcaaaaagaaaaatactcacacgcgctccctacgatacagat
ttaattgaaataaaagaatttgaagcagaatttgaatatcaagaaacacaagaccaattg
caagcaattgaagatgtaaaaaatgacatgcgctctaatacacctatggaaagactaatt
tgcggcgatgtatcatttggtaaaacagaagtagcaatgagagcttgcgctattgcatgt
tttaattcaagacaatgcattgtaatatcacctacaacaattctatcaatgcaacattat
agtacatttacagataggtttgcaaattttcctgtaaaaattgcacttctaaatagtttt
actaaaaaatcggatagagaaaaaataaaaagtggtcttgaagacggcagtattgatatt
ctgatttcaacacattcagtgtattttgccgatattaattttagaaatttaggtcttgta
attatagacgaagagcaacattttggtgttaaaataaaagaacacttcaagcaaaagtat
gagactgtagatatgctctacctatctgcaacaccaattccgcgcacattaaatatggca
ataaactctatttttggcataagcgttataaaaactccacctttatcgagaaaacgtatt
caaacatacgtaataaaacaaactgataaaataattaaagaggcaatagaacgggagctt
tcaagagacggaagtgtgttttttgttcacaatagaattgaaactatttatgaagttaag
gattctttagataaattggtgcctgagtatgaaaaacatattattcactcaaaattgcct
aaaaatgagataaaaaagataataacagattttgtaaatagaaaattccctattttaata
tctacttcgattattgaatccggtttggatctaaagcatgtaaatacaattattatatcg
caggcgcaaaattttggcttaagtgatttatatcagttaagaggtagagtagggcgctct
gatatagaagcttttgcttatttgttatacgatggaccactaagtgagcaggcttctatg
aggcttattacactaaaagaatatatggaaagaggggttggcttcaatatagcgttaaaa
gatttagaaatcagaggtgcaggtaacgtctttggtaaagatcaaagcggcaacttaaaa
gctattgggcatgatttatatgttgaattaatgcaagaagcattatctcaaatttccaat
gaaaatctggagcgcgaagtagagataaaatttatagataatatgtatataccagattgg
tatattgataacgaaaaaacagctatttatacgcttatttctaaagctaaaagcgaagaa
gagttaaatgacataaaaacctacattgaagataggtatggcaaaataccgaaaatagtt
ttaagacttatagaaattagtattataaagctatatgcaaaaaaggcttttgtaaaaagc
ttaatatttggtaaaaaaggtgtttcagtgcaattttatattgatgctaagattgatact
gataaacttataaaacaggtaaatattttgaaaggaaaatttttgagcgaaacaatggtt
tttttaaatattgacaaagataacttaaatgtgttaaaaaacttcttgattaatattgta
taa
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