Candidatus Desulfofervidus auxilii: HS1_000453
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Entry
HS1_000453 CDS
T09963
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HS1_000453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daw03021
]
HS1_000453
03400 DNA repair and recombination proteins [BR:
daw03400
]
HS1_000453
Enzymes [BR:
daw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HS1_000453
Transcription machinery [BR:
daw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HS1_000453
DNA repair and recombination proteins [BR:
daw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HS1_000453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AMM40259
UniProt:
A0A7U4TG83
LinkDB
All DBs
Position
complement(446575..447594)
Genome browser
AA seq
339 aa
AA seq
DB search
MSKVGGVKLIKPKKVERDEKSYSPYYGKFIYEPLEKGYGITLGNALRRVLLSSIPGAAIT
SVKIDGVAHEFSTISGVLEDVTDIVLNLKQVRLKLHANPPRTIKIEKEGEGEVKAGDIIT
DGSVMIVNPEQHIATLTSKEAKLIMEMTVNLGRGYVPAERNKQEGQPLGTVPIDAIFSPI
RKVNFTVRNARVGQMTDYDKLILEVWTDGTITSEKAISLAAKILRDQLDIFLIEEEEETL
SELPEEKEEEEIPKEVFYKNIDELELSVRALNCLKNSHIHLIGELVQKTEDELLKTRNFG
RKSLNEIKNVLHQMGLSLGMELQDFPDPEILKKIEGGQV
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagttggtggagtaaagttaatcaaaccaaaaaaggtagaaagagacgaaaag
agctattctccatattatgggaaatttatatatgaacctttagaaaagggctatggaatt
accttaggtaatgctttaagacgggtgttgctttcttctattccaggagcggctattact
tctgtaaagatagatggtgtggctcatgagttttcaactatttctggggtattagaagat
gtgacagatattgttttaaatctaaaacaagtgagacttaaacttcatgccaatcctcca
cgaacaattaagattgaaaaagaaggtgaaggggaagttaaagcaggtgatattattact
gatggtagtgtaatgatagtaaaccctgagcaacatattgctaccctgacctcaaaagaa
gccaagcttattatggaaatgacagttaatttagggagaggttatgtgcccgcagagaga
aataaacaggaaggccagccattagggactgttcctattgatgccattttttcacctata
agaaaggtaaatttcacagtgcgtaatgctagggttgggcagatgactgattatgataag
cttatcttagaagtttggaccgatggcacaatcacttcagaaaaggccatttctttagcg
gcaaaaatattaagagatcaattagatatctttttgattgaggaagaggaggaaacatta
tctgaattacctgaagagaaagaagaagaagagatacccaaggaagtcttttataaaaat
attgatgagttagaactctctgtgcgagcattgaattgcttaaagaattcccatattcac
ctcataggagagttggttcagaagacagaagatgaacttttaaaaaccaggaattttggt
cgtaaatctttaaatgaaataaaaaatgttcttcaccaaatgggtttaagtttgggaatg
gaattacaagactttccggatccggaaattttaaagaaaatagaaggtgggcaggtatga
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