Candidatus Desulfofervidus auxilii: HS1_000487
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Entry
HS1_000487 CDS
T09963
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HS1_000487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daw03021
]
HS1_000487
03400 DNA repair and recombination proteins [BR:
daw03400
]
HS1_000487
Enzymes [BR:
daw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HS1_000487
Transcription machinery [BR:
daw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HS1_000487
DNA repair and recombination proteins [BR:
daw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HS1_000487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RnfC_N
7TMR-HDED
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AMM40293
UniProt:
A0A7U4THJ0
LinkDB
All DBs
Position
complement(465347..469480)
Genome browser
AA seq
1377 aa
AA seq
DB search
MILEDVYNLFSKLMEPTDIKGIKIGLASPEKIREWSHGEVKKPETINYRTFKPEKDGLFC
ARIFGPVKDYECLCGKYKRMRHRGIVCERCGVEVISSKVRRERMGHIELASPVAHIWFVK
STPSKIGNLLDLTVRDLERIIYFESYIVIDPKDTPLKKGEVFSEDRYYELRAKYGNHFKA
GMGAEAIRDLLRDLDLAKLAQEIKSQIANTHSEATRKKLSKRLRIINAFLESGNKPEWMI
LEVIPVLPPDLRPLVPLDGGRFATSDLNNLYRRVINRNNRLKRLIELEAPEIIIRNEKRM
LQEAVDVLFENGRRGRTVTGSYGRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFVYHQLEKKGFATTIKSAKKMVEKETPEVWDALEEVVRE
HPVLLNRAPTLHRLSIQAFEPILIEGKAIQLHPLVCPPFNADFDGDQMAVHVPLSVEAQT
EARVLMMSTNNILSPAHGGPIILPTQDIVLGLHYMTKEKRGAKGEGMIFSSPEEVRIAYD
CGVVALHAKIKVKIEGEKIETTVGRVLLKEILPDKVPFRFINKVMAKKDVARLITESYHR
AGLKATVILCDKLKDWGFEQVTKSGISIGIDDLVVPKKKQKILEEAHQQVQEIEEQYRKG
LISDGERYNKVIDIWAKVSEEVAAEMMKELSEQVVEDKEGKKKKISSFNPIFMMSDSGAR
GSKDQIRQLAGMRGLMAKPSGEIIETPVTANFREGLTVLQYFISTHGARKGLADTALKTA
NAGYLTRRLIDVAHECVVKEEDCGTIDGITVEPLIESGEIIQTLGQRILGRVALEDIVDP
YTGEIIVRANEEIDEEAAQKIEESGLEKAKIRSVLTCQTKGGVCAKCYGRDLATGRLVNI
GEAVGIIAAESIGEPGTQLTMRTFHIGGTARRAIEESTLEAKYQGKVKFINLNIVETKKG
DLVVMNRNGELAIVEGGRERERYPIIYGACLKVKDGEEVHPGQLLAEWDLYASPILSEVS
GIVKFKDIIEGVTIQEKIDPVTSRVSKVVMEFKGTSYRPRICVVDETGNTLRTTTGREAV
YYLPVEALIMVEEGKRIHAGDILAKILRETTKTKDITGGLPRVADLFEVRKPKDAAVITE
IDGYISFGKEERGKRKVVVTPEVGEPRSYLISPGVHVTVHEGDFVRAGEALTEGSVNPQD
LLRVRGIKDTARYLLNEIQEVYRLQGVRINDKHIEIIIRQMMKKVRILEPGDTEFVVGEL
VDKYVFEEVNEKIIAQNGKPAQAEPVLVGITKASLGTESFISAASFQETTRVLTDAAVSG
KVDYLRGLKENVIVGLLIPAGTGLKVYRSTNIEVEQPEIVPEEVEGQIKKVEGQAAS
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgatattagaggatgtttataatcttttttctaagttaatggaacctaccgatattaaa
ggaataaaaatcggtttggcctcgccagaaaaaattagggaatggtctcatggagaagta
aaaaagccagaaacgattaattatagaaccttcaagccagaaaaagacggccttttttgc
gcccgcatatttggtccggtaaaggattatgaatgtttgtgtggtaagtataaacgcatg
agacacagaggtattgtgtgtgagagatgtggggttgaggttatttcttctaaggtgcgt
cgggagagaatgggtcatatagaattggcctctccagtggcacatatttggtttgtgaaa
agcactcctagtaaaatcggcaatcttttagatttgacagttcgagatttagaaaggata
atttattttgagtcttatattgtaattgaccccaaagacaccccactgaaaaaaggagaa
gtattttcagaagaccgttattatgaactccgagctaaatatggtaaccacttcaaggct
ggtatgggtgcagaggccattagagatttgttacgagacttagatttagctaaattagcg
caagagataaagagccaaatagcaaatactcactcagaggctactagaaagaaactttct
aagcgtttaaggattattaatgcctttttggaatcagggaataaacctgaatggatgatc
ttagaagtaattccggtattacccccagaccttcgccctttggtacccttagatggtggc
cgttttgccacttcggatttaaacaatttatatcggcgtgtgatcaatcggaataaccgt
cttaaaagattaatagaactggaggcgcctgagattattattcgtaatgaaaaacgtatg
cttcaagaagcagtggatgtgctttttgaaaatggacgtagaggtaggacagttacgggt
agctatggtcgtccccttaagtcattgagtgatatgcttaaaggtaaacaaggtcgtttt
cgtcagaatttattggggaaaagagtagattattcaggccgttcagtaattgttgtaggg
ccagaattgcgtttacatcaatgtggtttacctaaaaagatggctctagagctatttaag
ccatttgtttatcaccaattagaaaagaaaggatttgctactactattaaaagcgctaag
aaaatggtagaaaaagaaacccctgaggtatgggatgccttagaagaagtagtaagggaa
catccggtgttgcttaatcgggctcctactttgcaccgcttaagtattcaagcctttgaa
cctatattaattgaaggaaaggccattcaacttcatcccttagtatgcccgccttttaat
gctgattttgatggtgaccaaatggcggtgcatgtgcctttatctgtggaagcacaaact
gaagcaagagtactcatgatgtctactaataatattctttctcctgcccatggtggtcct
attattttgccaactcaagatattgttttgggtcttcattatatgactaaagaaaaaaga
ggggctaaaggtgaaggtatgattttttcctcacccgaagaagtgagaatagcctatgac
tgcggtgtagtggcgttgcatgctaagatcaaagtaaaaatagaaggagagaagatagag
acaacagttggccgggtgttattaaaagagattttaccagataaagttccttttagattt
attaataaggtaatggccaaaaaagatgtggctagattaataactgagtcctatcaccgg
gcgggtttgaaggctacagtgatattatgtgataaattgaaagattggggatttgagcaa
gtcactaaatctggtatttctattgggattgatgatttggttgttcctaaaaagaaacaa
aaaattttagaagaagcccatcaacaagttcaagagatagaagagcaataccgtaaaggt
ttgattagtgatggtgagcgatataataaagttattgatatctgggcaaaagtaagcgaa
gaagtagcggctgagatgatgaaagaactttctgagcaagtagtggaagataaagagggg
aaaaagaaaaaaatttcttcctttaatcctatttttatgatgagcgattcaggtgcaagg
ggtagtaaagatcagattagacaattagcaggtatgcgaggcctgatggccaaaccttca
ggcgaaattattgaaaccccagttaccgctaattttagagaaggtttgactgtccttcaa
tactttatctctacccacggtgcgcgtaaaggtcttgctgatactgctttaaaaaccgct
aatgccggttatctcactcggagattaatagatgtagctcatgaatgcgtggtgaaagaa
gaagattgtgggacaattgatggtattacggtagagcccttgattgaatcaggtgagatt
atccagactcttggtcaacgtatattaggccgcgtggccttagaagatatagtggaccct
tatactggggaaataattgtgcgagcaaatgaagaaatagacgaagaagcggctcaaaaa
atagaagaatctggtttagaaaaggcgaaaattcgttctgttcttacttgtcaaactaaa
ggcggtgtgtgtgctaagtgttatgggcgagatttagctacaggtaggttggttaatatt
ggtgaggcagtggggattattgcggctgaatctattggagaacctggcactcagctaact
atgcggactttccacataggaggaacagcgcggagggccatagaagaaagcacgttagaa
gccaaatatcaaggtaaggtaaaatttataaatttaaatattgtggagacaaaaaagggt
gatttggtagtaatgaatagaaatggtgaactagccatagtggaaggtggaagagagagg
gagcgttatcccataatttatggtgcctgtcttaaagtaaaagatggtgaagaagtacat
ccgggacagcttttagcagagtgggatttatacgcctctcctattctttctgaggtaagt
ggaatagtaaagtttaaagacataattgaaggtgtgactattcaggaaaaaatagaccct
gtgactagtagggtaagtaaagtggtaatggaattcaaagggacttcttatcgtccgcgt
atttgtgttgtagatgaaacagggaatacacttcgcactaccacaggtagagaagcagtg
tattatcttccggtagaagctctaattatggtagaagagggaaagagaatacatgccggg
gatattttggctaaaatcctcagagagactactaagaccaaagatattactggaggatta
cccagagtagctgatttgtttgaagtaaggaagcctaaagatgcggctgtgattacggag
atagatggttatatttcttttggtaaggaagaaagagggaagagaaaagtggtggtcaca
ccagaagtgggtgagccgcggagttaccttatttcaccaggtgttcatgttactgtccat
gaaggagattttgtgcgggcaggagaggcccttactgaggggtctgttaatccacaagat
ttgttaagggtaaggggtattaaagatacagctagatatctcttgaatgagatacaagag
gtatatcggcttcaaggagttaggataaacgataaacatatagaaatcattatccgccag
atgatgaagaaggtgagaatattagaaccaggagatacagaatttgtggtaggagagtta
gtggataaatatgtttttgaagaggtgaatgagaagattatagcccaaaatgggaagcct
gctcaggcagagcctgtattagtaggaattacgaaggcttctttaggaacagaaagtttt
atttcggctgcttccttccaagaaacgactagagtattaacagatgctgctgtaagcggt
aaggtagattatttgcggggattgaaggaaaatgttattgttggtcttcttattccagcc
ggtacaggtcttaaggtttatcgctctacaaatatagaagtggagcaacccgaaattgtg
cctgaagaagtggaagggcagataaaaaaagtggaaggtcaagctgcctcttaa
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