Candidatus Desulfofervidus auxilii: HS1_000642
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Entry
HS1_000642 CDS
T09963
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS1_000642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daw03019
]
HS1_000642
03009 Ribosome biogenesis [BR:
daw03009
]
HS1_000642
Enzymes [BR:
daw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HS1_000642
Messenger RNA biogenesis [BR:
daw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HS1_000642
Ribosome biogenesis [BR:
daw03009
]
Prokaryotic type
rRNA helicases
HS1_000642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
SNF2-rel_dom
CobA_CobO_BtuR
AAA_30
AAA_19
SWI2_SNF2
AAA_22
NAT10_TcmA_helicase
DUF4998
Motif
Other DBs
NCBI-ProteinID:
AMM40448
UniProt:
A0A7U4QJD2
LinkDB
All DBs
Position
complement(623457..625049)
Genome browser
AA seq
530 aa
AA seq
DB search
MRSLDKFKILGLSDNTLKALREKGFEVPTPIQEKIIPMLLKEEMDIVGQAQTGTGKTAAF
GLPLIEKIKERTKTVQVIILTPTRELAIQISEEINSFKGNKKLQIVPIYGGQSIEQQLKK
LREGVDIVVGTPGRVIDHIHRKSLKLGDISYFILDEADEMLNMGFIEDIEKILKNTNPEK
RMLLFGATMPPEILSLAEKYMREYQFIGIKKEQLTPDLTAQIYFEIASSDKLEALCRIID
MEKEFYGLIFCKTKIEADHIATRLIHRGYNAEALHGDRSQYQRERILNKFKYHRVNILVA
TDVAARGIDIANLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVEPEEYRKLIYII
KMAKTHIKKQKLPEIKDIINIKISRIKAELTHILKSKNYHEYIKIAQELLEENEAEDVLA
ALLKYSFQDELEKKSYNKIKEVSIDKKGKARLFVALGKIDGMTPKKLVAFIKQQTEVNER
KIEEIKVFDKFSFITVPFKEAEVILSIFKRNKKGKRPIIEEAKEKKIACS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtttagataaatttaaaatattgggattatcagacaacacattaaaggcattg
agggaaaaaggctttgaagtgcctactcccattcaagaaaagattatccccatgttatta
aaggaggaaatggatattgtaggacaggctcaaacaggcacaggaaaaacagcggccttt
gggttgccactcattgaaaagataaaagaaagaacaaaaactgttcaggtaattattctc
accccaactagagaattggctattcaaatctcagaagagataaattcttttaaaggtaat
aaaaaacttcaaatagtacctatatacggtggccagtcaatagaacaacaacttaaaaaa
ttgagggaaggagttgatatagtagtaggaactcctggaagagtgattgatcacatccac
aggaaaagtttaaaactaggagatatctcgtattttatcctggatgaagcagatgaaatg
ttaaatatgggatttatagaagatatagaaaaaattttaaaaaataccaatccagaaaaa
agaatgttgctttttggtgctactatgcccccagaaatattaagtctggctgagaaatat
atgagagaataccaatttataggcataaaaaaagagcagcttactcccgatttgacggcg
cagatttattttgaaatagcatcttcagataaactagaagcattatgcagaattatagat
atggaaaaggaattttatggactaatattttgtaaaacaaagattgaggctgaccatatt
gccaccaggcttattcacaggggttataatgcagaagcgttacatggagatagatctcaa
taccagagagaaagaattttgaataaatttaagtatcatagagttaatattctagtagcc
acagacgtggcggccagaggtatagatattgccaacttgacacatgtaataaattactct
ttacctcaagaccctgaatcttatgtgcatagaataggaagaacaggaagggcaggaaag
gaaggaacagccataacctttgttgaacctgaggagtatagaaaacttatttatataata
aaaatggccaaaactcatattaaaaaacagaaattgcctgaaataaaggatataataaat
ataaaaatatcaaggataaaggcggagcttacccatattctgaaatcaaaaaattaccat
gaatatattaagatagcccaggaattattagaagaaaatgaggcagaagatgttttagcg
gctcttttaaaatattcctttcaggatgaattggaaaagaaaagttataataaaattaaa
gaagtttctattgataaaaaaggaaaggcaaggctgtttgtagcattggggaaaatagat
ggtatgactcccaaaaaactagtagctttcataaaacaacaaaccgaagtgaatgaaaga
aaaatagaagaaataaaagtatttgataaattttcttttataaccgttccttttaaagaa
gcagaagtaatcctgagcatttttaaaagaaataaaaaaggcaaaagacccattattgaa
gaggccaaagagaaaaaaatcgcttgctcctga
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