Candidatus Desulfofervidus auxilii: HS1_000644
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Entry
HS1_000644 CDS
T09963
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HS1_000644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daw03400
]
HS1_000644
Enzymes [BR:
daw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HS1_000644
DNA repair and recombination proteins [BR:
daw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HS1_000644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMM40450
UniProt:
A0A7U4THP5
LinkDB
All DBs
Position
complement(625650..629066)
Genome browser
AA seq
1138 aa
AA seq
DB search
MDVLSLIKCNSKVSLCGLEGSALAYMLARIGQELNQPLFIVIPSLDDAQKIAEALKFFLS
PLEPLPLNEKVFLLPEEPSLPYTGVSPRPEVLGKQFKALFGLLNINSPVVVTTPKMLISY
FIPVSNFNQKIQIYQKGEEIPREEFIQFLQFLGYERLNLVEGVGEFSVRGEIIDIFCPLY
KWPLRLEFFGDTLESVRLFNPITQRSERHLNNFILIPANPIPHQEAAFKQAKKRIEALNL
TKEIAQKICSFLEIPIHQPGIEDYFPLFYEKTETLFDYLPEKTIFCLVQPGQLEKTAHFF
EKKVRSHLKELIEEKRIHLPFKYTIFPWRKIKNRLNNHKQILCYALPFLKTDVPIAQFKA
KIPFAHLSFSQKQSHFKPQIEKWQKMGYSISLVASHPWAQQRLAALFETWHYIVQTKTPP
FQHEPGISIYRGILSEGFILPEARLVILGERDWQIRTEPLVELPKKKELLPVSSFEDLKP
GNLLVHVQHGIGCYQGLKTVTSGGITGEFLVIEYQDKDKLYLPIDRLHLVQKYKGIGDKL
PSLDKLGGKTWGKTKQRVKKAIQKIAKELVSLYAKRLAQPGYAFSPPDSMFNQFTDSFPY
METPDQQRSIEEILADMSCPRPMDRLICGDVGFGKTEVAMRAAFKAILDAKQVAVLVPTT
ILAEQHYLTFKQRFAQFPVNIACLSRFRSLKEQKQILEKLKKGEIDIIIGTHRILQKDVV
FKDLGLVIVDEEHRFGVKQKEYLKKLKTSVDVITLSATPIPRTLYLSLLGIRDLSLIETP
PSGRRPVKTYLARFNPILLKDVISREMLRGGQVFFVHPRVRGLSGMARLLKRLLPQMQLG
IAHGQMPEKQLEETMLAFLRHEIDLLLCTSIIESGLDIPNANTIIINRADMFGLAQLYHL
RGRVGRAKEQAYAYLLVPGEKLITQEAQKRLRALLEHTELSSGYKLALYDLKLRGAGNIL
GINQSGHIAAVGYEMYLEILQRAIQELKGEPVYEEIEPEIKIPIMAYIPQTYISDQTQRV
TFYKRLSQVRDLNELQDLQTEMKDRYGQLPQVVENLFQLIQIKLWCRRLAIKRLDTKDGL
LRVYFHSKTPISSEKIVNFLKTHPSYSFTAQNALLIPLKKEHTFKKLEKTIQSLEEMI
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggatgttttatcactgattaagtgtaattctaaggtcagtctttgtggtttggaaggt
agtgctttggcttatatgttggctagaattggccaggaactcaatcaacctttatttatt
gtcatccctagcttggatgatgctcaaaaaatagcagaagcccttaagtttttcctttct
cccttagaacccttacctttaaatgaaaaggtgtttttattaccagaagagccttcttta
ccttatactggcgtaagccctagaccagaagtcttgggaaaacaatttaaggctttattt
gggttattgaatataaattctcctgtagtagttaccactccaaagatgttgatttcttac
tttattcctgtatctaactttaaccaaaagatacaaatttatcaaaaaggggaagaaatt
cctagggaagaattcattcaattcttgcaattcctgggttatgaacgattgaatctagta
gaaggggtgggagaatttagtgtgcgaggagaaattatagacattttctgccctttgtat
aaatggccattaaggctggaattttttggagacaccttagaatctgtgcgtttgttcaat
cccatcactcaacgttcagaacggcatttaaataattttattcttatcccagccaatccc
attcctcatcaagaagctgcttttaaacaggcaaaaaaacggattgaagcattaaattta
actaaagaaatagcccaaaaaatttgttctttcttagaaatacccattcatcaacctgga
atagaagactatttcccccttttttatgaaaagacagaaacattatttgactacctgcct
gaaaaaactattttttgccttgtccaaccaggccaactagaaaaaacagcccattttttt
gaaaaaaaggtcaggagtcatctcaaggagcttattgaggaaaaaagaatccacttgcct
tttaaatacactatattcccctggagaaaaataaaaaacagacttaataaccataaacaa
atcctctgttatgctcttccttttttgaaaacagatgtccctattgcccaatttaaagct
aagattccctttgctcatctttcatttagtcaaaaacagtcccattttaagcctcaaata
gagaaatggcaaaaaatgggttatagcattagtttggtggcttctcacccttgggcacag
caaagactagcagctttgtttgagacatggcattacattgtccagacaaaaacaccacca
tttcagcatgagcctggcattagtatttaccgtggtattctatctgagggttttatttta
cctgaagcaaggttagttattttgggagaaagggattggcaaattcgcactgagccttta
gtagaactccctaagaagaaagaactcttacctgtcagcagttttgaagacttaaaacca
ggaaatcttcttgttcatgtgcaacatgggatcggatgttatcaagggcttaaaaccgtt
accagtggcggcattacaggagagtttcttgtcattgaatatcaagataaggataaactc
tacctgcctatagatagattgcatctagtccagaaatacaaaggaataggagataaactc
ccctctctagacaaattaggtggaaaaacctggggtaaaacaaaacaacgggtaaaaaag
gctattcaaaagatagctaaagagctagtgtcactttatgccaaacgtttggcccagcct
ggttatgccttttctccaccagatagcatgtttaatcaatttacagacagcttcccttac
atggaaactcctgatcaacaacgctctattgaagaaattctagccgacatgtcatgccct
cgccccatggataggttaatttgtggcgatgtaggatttgggaaaacagaggtggcaatg
cgggctgcgtttaaggctattttagatgctaaacaagtagccgttcttgttcctaccact
atcttagcagaacaacattaccttacttttaaacaacgttttgctcaatttccagtaaat
atcgcttgtttaagtcgtttccgctccctaaaagaacaaaaacaaatcttagaaaaacta
aaaaagggagaaattgatattattataggcactcaccgcatcttacaaaaggatgttgta
tttaaagatttggggttagtaattgtggatgaagaacaccgttttggtgtgaagcaaaag
gaatatttaaagaaattaaaaaccagtgtggatgtaatcactctcagtgctactcctatt
cccagaacgctctatctttctctcttaggtataagggatttaagtctgattgaaactcct
ccttcaggtagaaggcctgttaaaacctacttagctagatttaatcctatcctgcttaaa
gatgttattagccgagaaatgcttagaggaggacaggtcttttttgtccaccccagggtg
cgaggtctttcaggtatggctagacttttaaaaagactgttgcctcagatgcaactgggt
attgctcatgggcaaatgccagaaaaacagttagaagaaacaatgcttgcctttcttcgc
cacgagatagacctccttttgtgcactagtattattgagtcaggtttagacatacccaat
gccaacaccataattattaatcgagcagacatgtttgggctggcccaactctatcatttg
agaggaagagtaggaagggctaaagaacaggcttacgcctatctgttagtgccaggagaa
aaactcattactcaagaggcccaaaaaaggcttcgggccttactggaacatactgagctt
tcttctggttacaaactggccctttatgatttgaagttgcgtggagcaggaaatatattg
ggcataaatcaatcaggacacattgcagctgtgggttatgaaatgtatctggaaatatta
caaagggccattcaggagttaaaaggagaacctgtctatgaagaaatagaaccagaaata
aaaatacctataatggcttatatcccacaaacctatatttctgatcaaacccagcgagtc
acattttataaaagattaagccaagtgagagatttaaatgaattacaagacttacagaca
gagatgaaagacagatatggccaattacctcaggtagtagaaaatcttttccaattgata
caaataaagctatggtgccggcggttagccattaaacgcttagatacaaaagatggatta
ttgcgtgtttacttccatagtaaaacccctatctcttctgaaaaaatagtaaattttctt
aaaactcatcctagctacagttttacagctcaaaacgccctccttatacctttgaaaaaa
gagcatacatttaaaaaattagaaaagaccatccaatctttagaagaaatgatttag
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