Candidatus Desulfofervidus auxilii: HS1_001482
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Entry
HS1_001482 CDS
T09963
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
daw
Candidatus Desulfofervidus auxilii
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
daw03016
]
HS1_001482
Enzymes [BR:
daw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
HS1_001482
Transfer RNA biogenesis [BR:
daw03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
HS1_001482
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
T3RM_EcoP15I_C
HSCB_C
Motif
Other DBs
NCBI-ProteinID:
AMM41281
UniProt:
A0A7U4TID8
LinkDB
All DBs
Position
1473442..1474008
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AA seq
188 aa
AA seq
DB search
MIRSFIAIPLPQSVKQSLEEIQKELRLIFPKVNWVKASNIHLTIKFLGNIEETQISALKQ
VMAVAAEKINPFSLQGYGLGAFPSLNRARVIWIGLQGDLAPLKALHNALEKGLTQLGFPE
ENRNFAPHLTLGRIKKRINTQLLSKIVEKYGNFTTPSFIVKEIVLFKSELHPKGAKYTAL
EKIIFKKE
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgattcggagttttattgctattcctttaccgcagtctgtgaaacagagtttagaagaa
attcaaaaggaattaagactcatctttcctaaagtgaactgggtaaaggcttctaacatc
caccttactattaagtttttggggaatatagaagaaacacaaatttctgctctaaaacag
gtaatggctgtggcagcagaaaaaataaaccctttcagcttacagggatatggccttgga
gcttttccctctttaaacagggcacgggtaatctggataggacttcagggagaccttgca
ccgttaaaagcattacataatgctttggaaaagggattaactcaattaggttttcctgaa
gaaaatcgcaattttgctccccaccttactttgggaagaattaaaaaaagaataaatacc
caattattatcaaaaatcgttgaaaaatatggaaatttcactacgccttcctttatagta
aaagaaattgtattatttaaaagtgagttacatcctaaaggagcaaaatatacagcctta
gaaaaaattatttttaaaaaggagtaa
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