Candidatus Desulfofervidus auxilii: HS1_001684
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Entry
HS1_001684 CDS
T09963
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HS1_001684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
daw03400
]
HS1_001684
DNA repair and recombination proteins [BR:
daw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HS1_001684
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HS1_001684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
SMC_N
AAA_21
AAA_29
ATPase
AAA_15
DnaJ_CXXCXGXG
nSTAND3
nSTAND1
RsgA_GTPase
AAA_22
AAA_23
SLFN-g3_helicase
AAA_25
cobW
APS_kinase
Glyco_hydro_31_2nd
Motif
Other DBs
NCBI-ProteinID:
AMM41478
UniProt:
A0A7U4TIM7
LinkDB
All DBs
Position
complement(1682057..1684429)
Genome browser
AA seq
790 aa
AA seq
DB search
MSELIIEGAAEHNLKGFDITIPKQKIIAITGVSGSGKSSLALDIIYKEGQRRYLSTLLPG
GNRLLPRFEKAKVREITGLSPTLGLKQHPTPFNSRSTIGTLTGIYGLLRVLYAKIGIPHC
PSCNFPLLTWTVPEIVKEILNLPKGEKLTFLVPIFPKKKKQWWKRYLKEGFTKIRIDGCV
YDMTEERFPDKGQRIEIMVDRIIVKEGIKGRIRDSVELAFRLGNILTIERPDKKTLFFTL
APICPQCGFFFPQISPAFFSFNSPLGACPACKGLGKKGEKICPVCEGKRLKTEALAVKIG
GKDIFSVSNLPLEDLMIFLRGLNLSSRQRRIASPILEEMEKRITQLLNIGLNYLSLSRSI
TQVSSGEYQRLILSLYVINTLSDVIFVLDEPTTGLHPKEVKRLISTLRLLKALGNTIIVI
EHDLEVILNADYVIELGPGAGEKGGEIVFVGNSEALKKSPTLTGQYLSGRKKLSRKKHLQ
KKDYLVIEGAAAHNLKNITVSIPLNCLTCICGVSGSGKTSLIINVLYQGLKQKLQGKGVN
FTIDIKGIEKIKKVVSIDAHPIGKTPKSNPATYTGVFTHIRQLFAQIPEARARGYTAERF
SLNVKGGRCEVCKGEGVVKIEMGILPNVFIPCDACQGKRFNPDTLEIIFKGKNIAQVLDM
SVIEAYEFFRHIPSIKKYLYTMIEVGLGYLKLGQPAPSLSGGEAQRLKLARELIPGTQRE
TIYILDEPSIGLHLEDINHLLSLLDKLIEKGNTVIIAEHHPEIIKAADYLIELGPEGGGK
GGYLINSGWI
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcttataattgaaggtgccgccgaacataatttaaagggttttgatattact
atcccaaagcaaaagattattgctatcacgggtgtaagtggttcagggaaatctagttta
gcccttgatattatatataaagaaggacaaagaagatatttgagcacacttctacctggg
ggcaatcgacttttaccccgatttgaaaaggcaaaggtaagagagattactggtctttca
cccacattgggtctaaaacaacatccaaccccatttaattcccgctctaccatagggact
ttgacagggatatatggccttttacgagttctttatgctaaaattggcatacctcattgt
ccttcctgtaatttccccttacttacttggactgtgcctgaaatagtgaaggaaattcta
aatttacctaaaggcgaaaaattaactttcttagttcccatctttcctaaaaagaaaaaa
caatggtggaaaagatatttaaaagaaggatttaccaaaataaggatagatggctgtgtg
tatgatatgactgaagagaggtttccagataaaggccagaggatagaaataatggttgac
cgcattatagttaaggagggtataaaaggacgaattagggattcagtagaattggccttc
agactgggaaatattttaaccatagaacgccctgataaaaaaacattattttttacactg
gcccctatttgtccccaatgtggattttttttccctcagatttctcctgcctttttttct
ttcaattctcctttaggtgcatgtcctgcctgtaagggattgggtaaaaagggagaaaaa
atctgtcctgtttgtgaaggaaaaaggttaaaaacagaagccttagcagtaaaaattggg
ggcaaggacatcttctctgtttccaatttacctttagaagacctaatgatttttttaaga
ggccttaatttatcttctaggcaaagacgtattgcctctcctatcttagaagaaatggaa
aaaagaataactcaattattaaatataggtttaaattatctttccctttcccggagtatc
acccaggtatctagcggtgagtatcaaaggcttatcctttctctgtatgttataaatact
cttagtgatgtgatttttgtcttggatgaacccactactggtcttcatcctaaggaagta
aaaaggcttatttctactctaagactgttaaaggcattaggcaataccataattgtgata
gaacatgaccttgaagtaatcttaaatgcagattatgtgatagaactaggaccaggggca
ggagagaaaggtggagaaattgtttttgtaggcaattctgaagcattaaaaaagagccct
acactcacaggtcagtatctttcaggaagaaaaaaactttcccgcaaaaaacatctacag
aaaaaagattatttggtgatagaaggagccgctgcccataatcttaaaaatattactgtt
tccattcctttaaattgtcttacctgcatttgtggtgtgagtggaagtggcaaaactagt
ttaataatcaatgtgctttatcagggattaaaacagaaacttcagggaaaaggagtaaat
ttcacgatagatataaaaggaatagaaaaaataaaaaaagtagtttcaatagatgctcat
cccattggaaaaacacccaagtctaatcctgctacctatacaggggtttttactcatata
agacaattgtttgctcaaataccagaggcccgagctagaggttatactgcagaaagattt
agccttaatgttaaaggaggcaggtgtgaggtttgtaagggagaaggggtagtaaagata
gaaatgggtattttaccaaatgtctttatcccctgtgatgcttgccaaggaaagcgattt
aatccggataccttagaaattatatttaaaggaaaaaatatagcccaagtcttagatatg
agtgttatagaagcctatgagttttttcgccatataccttctataaaaaagtatctttat
actatgatagaagtaggattagggtatttaaaactgggtcaacctgcccctagcctttct
ggtggagaggcccaaagattaaaattagctagagaattaataccaggaactcagagagaa
actatttatatcttagatgaacccagcataggacttcatttagaagacataaaccatttg
ttgtctcttttggataagctgattgaaaaggggaatacggttatcattgccgaacatcat
cccgaaattataaaggcagcagattatcttattgaacttgggcctgaaggcgggggaaag
gggggttatttaataaatagtggctggatatga
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