Candidatus Desulfofervidus auxilii: HS1_001983
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Entry
HS1_001983 CDS
T09963
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS1_001983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daw03019
]
HS1_001983
03016 Transfer RNA biogenesis [BR:
daw03016
]
HS1_001983
Enzymes [BR:
daw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HS1_001983
Messenger RNA biogenesis [BR:
daw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HS1_001983
Transfer RNA biogenesis [BR:
daw03016
]
Prokaryotic type
tRNA degradation factors
HS1_001983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
KH_Vigilin
DUF7357
Motif
Other DBs
NCBI-ProteinID:
AMM41775
UniProt:
A0A7U4QLX4
LinkDB
All DBs
Position
2006000..2008102
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AA seq
700 aa
AA seq
DB search
MQIQTEWEGRSFSITYGEMATQANGAVLVRYADTVVLATAVMSPEEIPGIDFMPLTVEYR
EMSYAVGKIPGGFFKREMGRPSDKEVVTARLIDRPLRPLFPKGFLREVQIITTVLSADQE
NDPDVLAIIGASAALIISDIPFYVPIAAVRIGRKNGEWIINPTRSQLTESELNLVVAGNE
EGVVMVEGDAQFVPEDTILEAIFVGYEALKPILKLQKELQKTAGKSKIEIIIPQKLNDLV
TKLERYLPLIEESLSIPEKLPRNRRLSQIFAQAVQEMSLNEEFLPQAKLIFEDFERKLIR
EKILKGKRIDGRGLKDIRPIQCEVGILPRTHGSAIFKRGETQVLAVTTLGTTEDEQKIDA
LYGDSFKSFMVHYNFLPYCVGEVRPLRGPSRREIGHGFLAERALKPIIPREEEFPYTIRV
VSEVLESNGSSSMATVCSGCLSLMDAGIPVKKPIAGIAMGLVKENDNIAILSDILGEEDH
CGDMDFKLAGSREGVTAIQMDIKIEGISKDILHQALIQAREGRLFILDRMEAVLPAPKTS
ISPHAPKVSIIEIPPEKIANLIGPGGKVIKDIMAKTGVNIDIKETGKVHIVSHSEEQLKK
AIEMVKQVTQEVEEGRLYIGKVKRIMDFGALVEILPGTVGLVHVSELDYKRVNKVSDILK
EGDEVLVRVLKIEKDGKIKLSRKAALSPSLNLRKKGEYRY
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatacaaactgaatgggaaggacgttcattttctattacttatggtgaaatggcc
actcaggctaatggagcagttttagtccgttatgctgatacggtggtacttgctacggct
gttatgtcaccagaggaaataccaggaatagactttatgcccttaaccgttgaatatcgt
gaaatgtcttatgctgtgggaaagattccagggggtttctttaagagagaaatgggaaga
cctagtgataaagaggtagtaactgctcgactaatagatagacctcttcgtcctcttttt
cctaaaggatttttaagagaagttcaaatcatcactaccgttttgtcagcagaccaagaa
aacgacccggatgtcctggctataattggggcttcagcggctcttataatttcagacatc
cctttttatgttcctatcgccgcggtgagaataggaaggaaaaatggagaatggataatt
aatcctacacgttcccaattaacagagagtgaattaaatttagttgtggctggaaatgaa
gagggagtagtaatggtagagggagatgcccaatttgtccctgaagacactattttagaa
gccatttttgtaggatatgaggcgttgaaacccattttaaagttgcaaaaggaattgcaa
aaaacagcaggtaaatctaagatagaaataataatccctcaaaaactaaatgatttagtg
accaaattagagaggtatcttcccttaattgaagaatcacttagtatccctgagaagtta
cctcggaatagacgattgagccaaatatttgctcaggcagttcaagaaatgtctcttaat
gaagaatttttacctcaagccaagctcatttttgaagattttgaaagaaagcttatcagg
gaaaaaatattgaagggaaaacgtattgatgggcgtggtttaaaagacatcagacccatt
cagtgtgaagtagggattttacccagaactcacggctcagccatatttaaacgtggtgag
acccaggttttagctgtgactactttaggaacaacagaagatgaacaaaagatagacgct
ctttatggtgatagttttaagtcttttatggttcattacaactttcttccttattgtgtg
ggagaggtgagaccattaaggggacctagcagacgagaaataggacatggtttcttagcc
gaacgggccttaaaacccattattcccagagaagaggaatttccttatactatcagggtg
gtctcagaagtcttagaatcaaatggttcttcttctatggctactgtgtgtagtggttgt
ctttctctgatggatgcaggcattccagttaaaaaacccatagctggtattgctatgggt
ttggtaaaagagaatgataatatagctattctttctgatattttaggagaagaggaccat
tgtggagatatggatttcaaattagctggttctagagaaggtgtgactgcaattcaaatg
gatattaagattgagggcatcagtaaggatattcttcaccaagctttaatacaagctaga
gagggaaggctttttattttggatagaatggaggctgtcttaccagcccctaaaacttct
atctctcctcatgctcctaaagtatctattatcgaaatacctcctgaaaagatcgccaac
cttattggtcctggagggaaagtaattaaagatattatggccaaaacaggagtgaatata
gatattaaggaaactggtaaagttcatattgtctctcatagtgaagaacaacttaaaaag
gccatagagatggtgaaacaagtcactcaggaggtagaagaggggcggttatatattgga
aaggtgaagagaataatggattttggggcattggtagaaatccttccagggacagttggt
ttggtgcatgtttctgaattggactataaacgagtgaataaagtaagtgacattcttaaa
gaaggagatgaagttttagtaagggttttaaaaatagaaaaagatggaaagattaagttg
agtcggaaggcagctctaagtccctccttaaatcttcgcaagaaaggagagtatcgttat
taa
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