Candidatus Desulfofervidus auxilii: HS1_002406
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Entry
HS1_002406 CDS
T09963
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
daw
Candidatus Desulfofervidus auxilii
Pathway
daw03030
DNA replication
daw03430
Mismatch repair
daw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
daw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HS1_002406
03430 Mismatch repair
HS1_002406
03440 Homologous recombination
HS1_002406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
daw03032
]
HS1_002406
03400 DNA repair and recombination proteins [BR:
daw03400
]
HS1_002406
Enzymes [BR:
daw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HS1_002406
DNA replication proteins [BR:
daw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HS1_002406
DNA repair and recombination proteins [BR:
daw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HS1_002406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Nipped-B_C
Capsid_pestivir
Motif
Other DBs
NCBI-ProteinID:
AMM42188
UniProt:
A0A7U4QMQ0
LinkDB
All DBs
Position
2413115..2416552
Genome browser
AA seq
1145 aa
AA seq
DB search
MNQFVHLHVHTQYSLLDGAIRLPDLMAKVKEYNMPAVAMTDHGNLFGVIDFYEMALDNGI
KPIIGCEVYLAQDHKQKTKKEKLNHLLLLAEDEIGYHNLLKLVSISHLEGFYYKPRLDKN
LLAQYHEGLIALSACLQGEVPSLILQNRYEDAQNAAQTYIDIFGKGNFYLELQANGLPEQ
EIANKELIKLGKKMGLPVVATNDCHYLQKEDASAHDILLCIQTGKNINDQNRMRFSTDQF
YFKSPQEMITTFSEIPEAIKNTLEIKERCNIKFELDNYHFPVFPLPEGETVNSYLMKSAE
KGLKQKLSILGLNDTKQKAYWERLNYELKVITQMGFAGYFLIVADIIKQAKKRGILVGPG
RGSAAGSLVAYALDITEIDPLPYNLLFERFLNPERKSLPDIDTDICMERRDEVLKYISRK
YGGKEHVAQIITFGKMQARAVVRDVGRALNMPYQEVDRIAKLIPPFLNITLTDAIKTEPR
LQEQAKQDKRVRKLLEVAQRLEGLPRHASTHAAGVVISDKPLVHYLPLSRGTKGEVITQF
DMKGVERVGLIKFDFLGLKTLTVINKTLSLIKKHTGNEFDLNHISLKDKPTYKLLSNGDT
TGVFQLESSGMKELLRRLKPNCFEDLIALIALYRPGPLESGMVEDFIKRKHRKVSIKYDL
PQLEPILKETYGVILYQEQVMQIAVTLAGYTSGQADNLRKAMGKKKPEIMAQEKKLFIEG
AVKNGISREKAEHIFNLIEKFAGYGFNKSHSTAYALIAYRTAYLKAHYPLEFMAALLTCE
MTSQDEIVKYVNECREKKIEILPPDINRSEIDFVVEDNKIRFSLAAIKNVGTAAVPYILK
ARAKKPFSSLADFCERVDAHKVNKRVIESLIKAGAFDCLNTKRSQLMFILQKTMEKAHRK
QRGLRENQLTLFDLAETDVSDISLPTMDEWTEEMRLNYEKEALGFYLTGHPLHSYEETLK
ELSNTNTEEIKDLADHTPVMLGGIIIALKEINSKKGERMAFATLEDIRGKVEVVVFSNVY
REARDYFRQEQPLFISGHISKDENTTKVIAEKVYFLAEAKEKLRKPKKIQDKKIKIVLKE
GEIDSNQLLTLKDILKKHKGKCSVYLEIFPQETLVALPYYLYVNPSQEFVRSVNELLGYQ
AVEIK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaatttgttcatctccatgttcatactcaatatagtcttctagatggggctatt
cgcttgccggatttaatggctaaagtgaaagaatataatatgccagccgtagctatgact
gaccatggaaatttatttggagtaattgatttttatgaaatggctttagataatgggata
aaacctataataggatgtgaggtttatcttgctcaggaccataaacaaaaaactaagaaa
gaaaagctgaatcatcttctccttttagcggaagatgagattggttaccacaatttatta
aaattagtaagtatttcccacctagaaggtttttattataagcctcggctggataaaaat
ttacttgctcaatatcatgaaggacttattgccctgagtgcttgtctgcaaggagaagtg
cctagtcttattcttcaaaatcgttatgaagatgcccaaaatgcagctcaaacctatata
gatatatttggtaaaggaaacttttacttagaattacaggcaaatggtttgccagagcaa
gaaattgccaataaagaattgattaaattaggcaaaaaaatgggattacctgtagtagct
accaatgattgtcattatttacaaaaagaagatgcttcagctcatgatattcttctttgt
attcaaacaggaaaaaatataaatgaccaaaatagaatgcgttttagcacagaccagttt
tattttaaatcacctcaagaaatgataaccaccttttccgagataccagaggccattaaa
aataccttggaaatcaaagaaaggtgtaatattaaatttgaacttgacaactatcatttt
cctgtctttcctctccctgaaggggaaacagtaaatagttatcttatgaaaagcgctgaa
aagggattaaagcaaaaattatctattctgggcttgaatgataccaagcaaaaggcctat
tgggaaagattaaactatgagttaaaagtaattacccaaatgggttttgcgggatatttt
ttgattgtagcagatatcatcaaacaggccaaaaaaagggggattttagttggtcctggt
cgaggttctgctgcagggagtttggtagcctatgccctagatatcactgaaatagaccca
cttccttataatttactctttgagagatttttaaaccctgaaagaaagagcttacctgat
atagataccgatatttgtatggaaagacgggatgaagtattaaaatatatttctcgcaaa
tatggaggtaaagagcatgtagcccaaattattacctttggtaagatgcaagcacgtgca
gtagtgcgagatgtaggtcgtgccctaaatatgccttatcaggaagtagatagaattgct
aaacttattcctccttttttaaatattaccttaacagatgccataaagactgaacctaga
ttgcaagaacaagccaagcaagacaaaagagtgaggaaactactagaagttgcccaacgg
ttagaaggtttgccccgacatgcttctacccatgctgcaggggtagttatctctgataag
cctttagtgcattatttacctttatcccgtggcaccaaaggtgaagtgattacccagttt
gacatgaaaggagtagagcgagttggattaattaaatttgattttttgggattgaagacc
ctgacggtgattaataagaccctctctttgatcaaaaagcatactgggaatgaatttgat
ttaaaccatatttctttaaaagataaacctacctataaactcctttctaatggtgatact
actggtgtatttcagttagaaagctccggtatgaaggagcttttgagaaggcttaaacct
aattgttttgaagatttgattgccttgattgccctttatcgtcctggaccgttggaaagt
gggatggtagaggattttattaaacgcaaacaccgtaaagtatccataaagtatgattta
ccccaacttgaacctattttgaaagaaacttatggggttattctttatcaagaacaagta
atgcaaattgccgtgacactcgcaggttatacatcaggacaggctgataatctacgtaag
gctatgggaaagaaaaaaccagaaatcatggcacaggagaaaaaactgtttatagaaggc
gctgtaaaaaatggtatttctagagaaaaagcagagcatattttcaatttaatagagaag
tttgctggatatggttttaataagtctcacagcacggcctatgccttgatcgcttatcgc
actgcttatttaaaggcccactatccactggagttcatggctgccttgttaacttgtgaa
atgacatctcaggatgaaatagtgaaatatgtcaatgagtgtagagagaaaaaaatagaa
attttacctccggacataaatcgcagtgagatagactttgtagtggaagataataaaatt
cggtttagcctggccgccattaagaatgtagggacagcggcagtgccttatattttaaag
gctagagcaaagaaaccttttagctctttagctgatttctgtgagcgggtggatgcccat
aaggtaaataaacgggtgattgagagtctgattaaggcaggtgcctttgattgtttaaac
actaaacgttcacaattaatgtttattctgcaaaagacaatggaaaaggcgcaccgtaag
caacgagggttaagagaaaatcaattaactctattcgatttagcagaaacagatgtttca
gacatctccttgcctactatggatgaatggactgaagagatgaggcttaattatgaaaag
gaggctctaggtttttatcttacaggacatccattacatagttatgaagagactttaaag
gaattgagcaataccaatacagaggaaatcaaagatttagctgaccatacaccagtgatg
ttaggaggaataattattgccttaaaggaaatcaactctaaaaaaggcgaacggatggcc
tttgctactttagaggatataagagggaaagtagaggtagtagtatttagcaatgtttac
cgggaggcaagagattattttagacaagagcaacctttatttatttcgggacatataagt
aaagatgaaaatactaccaaagtgattgccgaaaaggtatattttctagctgaggccaaa
gaaaagttgagaaaaccaaaaaaaatccaagataagaagataaaaattgtcttaaaagaa
ggagagatagactcaaatcagcttttgactcttaaagatattttgaaaaaacataaggga
aaatgctcagtatatttagaaatcttccctcaggaaaccttagtagccttgccttattat
ctctatgttaatcctagtcaagagtttgttcgtagtgttaatgaattactggggtatcaa
gccgtagaaataaaatga
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