Desulfoglaeba alkanexedens: FDQ92_08155
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Entry
FDQ92_08155 CDS
T05964
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dax
Desulfoglaeba alkanexedens
Brite
KEGG Orthology (KO) [BR:
dax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dax03016
]
FDQ92_08155
Enzymes [BR:
dax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FDQ92_08155
Transfer RNA biogenesis [BR:
dax03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FDQ92_08155
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
WHD_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QCQ22136
UniProt:
A0A4P8L2J3
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All DBs
Position
complement(1805003..1807027)
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AA seq
674 aa
AA seq
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MTAPTTPQRIEPGTVVEFFEAKEVLLGVCLAVKNQRLSILSENNRELNLARSRVLHASSK
PLDLKEGREGAVQALKLLKRRREDLAAQVNVEEIWEVLEEEAEGVELQDLVGLVFPEEPA
DDEAAAVQRVLLRDRLYFQFKDGRFYARSREKVEQRRLELEREAEQERLLEAGACWLGSL
KHKKAAFPAEEFRVRILDALKDYALFGQESAQQSFAKELLKRAGLTPQPHSAFRTLVRLG
EWREDENLYLYQQGIARDFPQEILDFAVRKAETLTIPDGRPRRDLRGLHAFTIDSAQTKD
YDDALSFRILEEEFYEVGIHIADAAAVVDKDDPVDREARSRATSIYLPDARIPMLPPVLS
EGVCSLQSGRDRLALTFLVRIDREGTVLSREVFSSIIRVREQLTYEDVNRKVEEEEAFRE
LYRLSQRLRAKRLEMGAVILPLPEINVYVNAEGMIQVSRYEKETPSQIIVSEWMIAANSL
AAEYLAEKGVPAIYRSQGECRPETDQVQSEHEIFHIYRQRRLFARAELETEPGVHCSLGV
PTYTSITSPIRRYIDLVVQRQLVHALETGEAFYSEEELRNLITRLRAQLSRVVFVHRKWT
RYWILKYLEQEDIQTMNAIVLDKNARFAQILIPDFLLETQVPLPPETTIQQGEMIAVKVE
RLNPRDEVLRVQVA
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctccaaccacccctcaacggatagaacccggtacggtcgtggagtttttcgaa
gccaaggaagtcctgctgggtgtgtgtcttgccgtcaagaatcagcgactcagcatcctt
tccgaaaacaaccgggaactgaaccttgcccgcagccgcgtgcttcacgcgtcttcgaag
cccctcgacctcaaagaaggccgggagggagcggttcaggcgctcaagcttctcaagcgg
cggagggaagatctggcggcccaggtgaacgtcgaggagatctgggaagtcctggaagaa
gaggcggagggcgtggaactccaagacttggtcgggctggtctttccggaggaaccggca
gacgacgaggcggccgccgtgcagcgggtcctcctccgagaccgcctctattttcagttt
aaggacggacggttctatgcccggagccgggaaaaggtggaacagcgccgactggaactg
gaaagggaagccgagcaggaaaggctcctggaagcgggggcgtgctggctggggtcgttg
aagcacaagaaggcggcctttccagcggaagaattccgggtccggatcctggacgcactg
aaagactatgcccttttcggtcaagaatcggcgcagcagtccttcgccaaggaactcctg
aagcgcgccgggctcaccccccagccccattccgccttccgcaccctggtccggctcggc
gaatggcgggaagacgaaaacctctacctgtaccagcaggggatcgctcgggacttcccg
caagagattctcgactttgcggtacgaaaggccgaaaccctcacgatccccgacggtcgg
ccgcggcgcgatctccgcggactgcacgccttcaccatcgacagcgcccagacgaaggac
tacgacgatgctttgagctttcgaatactcgaggaagagttctacgaggtcggaatccac
atcgcagacgccgcggcggtggtggacaaagacgacccggtggatcgggaagcgcgctct
cgagccacttccatttatcttcccgacgccaggattcccatgctgccgccggtgctttca
gagggcgtgtgcagccttcagtcgggcagggaccgactggcgctgaccttcctggtccgg
atcgaccgtgaggggacggtcctttcccgggaggttttctcgagcatcatccgggtccgg
gaacagctcacctacgaagacgtgaaccggaaggtcgaggaagaagaagctttccgggag
ttgtaccggttgagccagaggcttcgagcgaagcggctcgagatgggcgccgtcatcctt
ccgcttccggaaatcaacgtgtacgtgaatgccgaaggcatgatccaagtgagccgttat
gaaaaagaaaccccgagccaaatcatcgtgtcggaatggatgatcgccgccaacagcctg
gccgccgagtacctggccgaaaaaggcgtccccgccatttaccggagccagggagagtgc
cggccggaaacggatcaggtgcaaagcgagcatgagatcttccatatctaccgccagcgc
cgtcttttcgctcgagccgaactggagacggagcccggagtccattgcagcctgggggtt
cccacgtacacgagcatcacatcacccatccgccgctacatcgacctggtggtgcagcgg
cagttggtgcacgcgttggaaaccggggaagcgttctactcggaagaagaactgcggaac
ctcatcacccggctcagggcacagctttcgcgcgtggtgttcgtccaccggaaatggacc
cgctactggatcctgaaatacctggaacaggaagacatccagaccatgaacgccattgtt
ctggacaagaacgctcggttcgcccagatcttgattcccgacttcctgctggaaacccag
gttccgctgccgcccgaaaccacgatccaacagggcgaaatgatcgccgtcaaggtggaa
cgcctgaacccgagggatgaagtgctccgggttcaagtcgcctga
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