Desulfoglaeba alkanexedens: FDQ92_09345
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Entry
FDQ92_09345 CDS
T05964
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dax
Desulfoglaeba alkanexedens
Pathway
dax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDQ92_09345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dax03019
]
FDQ92_09345
Messenger RNA biogenesis [BR:
dax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FDQ92_09345
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QCQ22345
UniProt:
A0A4P8L5J2
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All DBs
Position
complement(2058779..2060443)
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AA seq
554 aa
AA seq
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MNSPHLKIIPLGGLGEIGLNMMVVEYGETLIIVDAGLMFPEEDMLGIDIVIPDFTYLREN
RDRIQALIVTHGHEDHIGAIPFFLREFQVPVYATPLTLALISEKLREHNLLQWSRLVRVL
PRETIRIEPFEIEFIQVCHSIPDGVGLAIRTPAGVLVHSGDFKIDNTPIDGRRCDLARFA
AYGEEGVLALLSDSTNVEREGYTLSEREIGRTLREIFRECPGRIVVAVFASNIHRIQQVV
DIAREFDRKVFLNGKSMVANIRIARELGYIDFDPDEEIFLPDIQKLPDSQVLMLTTGTQG
EPFSALTRMAFNVHRKLKVQPGDTIILSSKFIPGNERAIHNIINNLYRQGAEVIHEQVKD
IHVSGHAYREELKLLINLVKPKYFIPIHGEFRHLVKHRQLAAATGIPPERCVVAENGNII
HFMPEGTVVEKGVEAGRVFVDGKGVGDVGDLVLRDRRHLSEDGMVIASLVLSKETLEILN
GPDLISRGFILEETKPEILDGAKCVVLEVLDRFISDSAVWDCADFQMEIRRELKRFFQRV
LERRPFIYPIVVEI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaccgcatcttaaaatcataccgctgggagggctcggcgaaatcgggctcaac
atgatggtcgtcgagtacggcgagacgctgatcatcgtggatgcggggctcatgtttcca
gaggaagacatgctggggatcgacatcgtgattcccgacttcacctatctccgggaaaac
cgcgaccggattcaggcgctgatcgtcacccacggccatgaggaccacatcggagccatc
cccttttttctcagggagttccaggttcccgtatatgccacgccgctcaccctggcgctc
atctccgaaaagctgcgggaacacaacctgctgcagtggtcccggttggtccgggtcctg
cctcgggaaacgatccggatcgagccctttgagatcgaattcatccaggtctgtcacagc
attccggacggtgtgggcttggcgatccgcacgccggcgggcgtgctcgtccattcgggg
gacttcaaaatcgacaacacgcccatagacggccgtcgatgcgacttggctcgttttgct
gcctacggtgaagaaggagtgctcgccctgctttccgattccactaatgtggaacgggaa
ggctatacgctgtccgaaagggagatcgggcgcacgcttcgggagatcttcagagaatgt
cccgggcgcatcgtcgtcgcggtcttcgcgagcaacatccaccggattcagcaagtggtg
gacatagcccgagaattcgaccgcaaggtttttctcaacggcaagtccatggtggcgaat
atccggatcgcccgggaactgggctacatcgacttcgatcccgacgaagaaatcttcctg
cccgatatacagaaactgcccgattcccaggtgctcatgctcaccaccggaacccagggg
gaacccttcagcgccctcactcggatggcgttcaacgtccaccgcaagctcaaggtccag
cccggcgatacgatcattctttcttccaagttcatcccgggaaacgaacgggccattcac
aacatcatcaacaatctttaccgccagggggcggaggtgatccacgaacaggtcaaagac
atccatgtctcgggccatgcctaccgagaggagctgaaacttctcatcaatctggtgaag
ccgaagtacttcattccgatccatggagaatttcgccacctggtgaaacaccgccaattg
gccgccgcgacggggatacccccggaacgttgcgtggttgcggagaacggaaatataatc
cattttatgccggaaggtaccgtggtcgaaaagggcgtggaagcgggccgcgtcttcgtg
gacggtaaaggagtgggggatgtgggggacttagtgcttcgggatcgccgtcacctttcc
gaagacggaatggtgatcgcctcgctggtcctgagcaaggaaaccctggaaatcctgaac
ggccccgacctgatcagccgcggcttcatcctcgaagaaacgaagcccgagatcctggac
ggcgccaagtgcgtagtcctggaagtgttggatcgctttatttccgacagcgcggtgtgg
gactgcgccgatttccagatggaaatccgcagagagctcaagcggttctttcagcgggtg
ctggaacggcgcccgttcatctatcccatcgtggtcgagatctga
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