KEGG   Desulfoglaeba alkanexedens: FDQ92_09345
Entry
FDQ92_09345       CDS       T05964                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dax  Desulfoglaeba alkanexedens
Pathway
dax03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dax00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FDQ92_09345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dax03019]
    FDQ92_09345
Messenger RNA biogenesis [BR:dax03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     FDQ92_09345
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QCQ22345
UniProt: A0A4P8L5J2
LinkDB
Position
complement(2058779..2060443)
AA seq 554 aa
MNSPHLKIIPLGGLGEIGLNMMVVEYGETLIIVDAGLMFPEEDMLGIDIVIPDFTYLREN
RDRIQALIVTHGHEDHIGAIPFFLREFQVPVYATPLTLALISEKLREHNLLQWSRLVRVL
PRETIRIEPFEIEFIQVCHSIPDGVGLAIRTPAGVLVHSGDFKIDNTPIDGRRCDLARFA
AYGEEGVLALLSDSTNVEREGYTLSEREIGRTLREIFRECPGRIVVAVFASNIHRIQQVV
DIAREFDRKVFLNGKSMVANIRIARELGYIDFDPDEEIFLPDIQKLPDSQVLMLTTGTQG
EPFSALTRMAFNVHRKLKVQPGDTIILSSKFIPGNERAIHNIINNLYRQGAEVIHEQVKD
IHVSGHAYREELKLLINLVKPKYFIPIHGEFRHLVKHRQLAAATGIPPERCVVAENGNII
HFMPEGTVVEKGVEAGRVFVDGKGVGDVGDLVLRDRRHLSEDGMVIASLVLSKETLEILN
GPDLISRGFILEETKPEILDGAKCVVLEVLDRFISDSAVWDCADFQMEIRRELKRFFQRV
LERRPFIYPIVVEI
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgaattcaccgcatcttaaaatcataccgctgggagggctcggcgaaatcgggctcaac
atgatggtcgtcgagtacggcgagacgctgatcatcgtggatgcggggctcatgtttcca
gaggaagacatgctggggatcgacatcgtgattcccgacttcacctatctccgggaaaac
cgcgaccggattcaggcgctgatcgtcacccacggccatgaggaccacatcggagccatc
cccttttttctcagggagttccaggttcccgtatatgccacgccgctcaccctggcgctc
atctccgaaaagctgcgggaacacaacctgctgcagtggtcccggttggtccgggtcctg
cctcgggaaacgatccggatcgagccctttgagatcgaattcatccaggtctgtcacagc
attccggacggtgtgggcttggcgatccgcacgccggcgggcgtgctcgtccattcgggg
gacttcaaaatcgacaacacgcccatagacggccgtcgatgcgacttggctcgttttgct
gcctacggtgaagaaggagtgctcgccctgctttccgattccactaatgtggaacgggaa
ggctatacgctgtccgaaagggagatcgggcgcacgcttcgggagatcttcagagaatgt
cccgggcgcatcgtcgtcgcggtcttcgcgagcaacatccaccggattcagcaagtggtg
gacatagcccgagaattcgaccgcaaggtttttctcaacggcaagtccatggtggcgaat
atccggatcgcccgggaactgggctacatcgacttcgatcccgacgaagaaatcttcctg
cccgatatacagaaactgcccgattcccaggtgctcatgctcaccaccggaacccagggg
gaacccttcagcgccctcactcggatggcgttcaacgtccaccgcaagctcaaggtccag
cccggcgatacgatcattctttcttccaagttcatcccgggaaacgaacgggccattcac
aacatcatcaacaatctttaccgccagggggcggaggtgatccacgaacaggtcaaagac
atccatgtctcgggccatgcctaccgagaggagctgaaacttctcatcaatctggtgaag
ccgaagtacttcattccgatccatggagaatttcgccacctggtgaaacaccgccaattg
gccgccgcgacggggatacccccggaacgttgcgtggttgcggagaacggaaatataatc
cattttatgccggaaggtaccgtggtcgaaaagggcgtggaagcgggccgcgtcttcgtg
gacggtaaaggagtgggggatgtgggggacttagtgcttcgggatcgccgtcacctttcc
gaagacggaatggtgatcgcctcgctggtcctgagcaaggaaaccctggaaatcctgaac
ggccccgacctgatcagccgcggcttcatcctcgaagaaacgaagcccgagatcctggac
ggcgccaagtgcgtagtcctggaagtgttggatcgctttatttccgacagcgcggtgtgg
gactgcgccgatttccagatggaaatccgcagagagctcaagcggttctttcagcgggtg
ctggaacggcgcccgttcatctatcccatcgtggtcgagatctga

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