Dermacoccus abyssi: FV141_00625
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Entry
FV141_00625 CDS
T06197
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
day
Dermacoccus abyssi
Brite
KEGG Orthology (KO) [BR:
day00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
day03016
]
FV141_00625
Enzymes [BR:
day01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FV141_00625
Transfer RNA biogenesis [BR:
day03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FV141_00625
Prokaryotic type
tRNA splicing ligases
FV141_00625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Egg_lysin
Motif
Other DBs
NCBI-ProteinID:
QEH92205
UniProt:
A0A417Z3S1
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All DBs
Position
125512..126681
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AA seq
389 aa
AA seq
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MERISPTLFNWASILEDSTREQAVTTASMPFVFPHLALMPDAHLGRGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTQHTAADLPTERASVRQAIERAIPLSAGGANRKISREHTQVRI
DELETMAEEAGFDPAAYAKKWKLQLGSLGSGNHFIEISLDEEDRVWLFLHSGSRGVGNRI
AQHHIKAAEAYCRTNWIQLPDRDLAYLVEGTPQFDAYIRELRWAQHFALLNREEMMDRVV
RQYAEWVGEPVTELERINCHHNYTEQEKHFGKNVWLSRKGAINAEAGRPGLIPGSMGTAS
YVVVGKGNALSLNSSPHGAGRAFSRSAARKRFTGDELREAMKGIEYRDTDAFIDEIPGAY
KDIDQVMADAADLVEIRHTLRQIVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcatttccccgaccctcttcaactgggcctcgatccttgaggattcgacccgc
gagcaggccgtcaccacggcgtcgatgccgttcgtcttcccgcacctggccctcatgccg
gatgcccacctcggccgtggcgcgaccgtcggctcggtcattccgacgctcggggccatc
atcccggccgccgtcggtgtcgacatcggctgcggcatgatcgccgtccgcacgcagcac
acggcggcagatctgcccaccgagcgtgcgtccgtgcgtcaggcgatcgagcgcgccatc
ccgctctcggcgggtggggccaaccgcaagatcagccgagagcacacgcaggtgcgcatc
gacgagctcgagacgatggccgaagaggccgggttcgacccggccgcgtacgcgaagaag
tggaagctccagctcggatcgctcggttccggtaaccacttcatcgagatctcgctcgac
gaggaggaccgggtgtggctcttcctgcactccggttcgcgaggtgtcggcaaccgcatc
gcccagcaccacattaaggcggccgaggcgtactgccggacgaactggatccagctgccc
gaccgtgacctcgcctacctcgttgagggaacgccgcagttcgacgcctacatccgtgaa
ctgcgctgggcgcagcacttcgcgctcctcaaccgcgaggaaatgatggaccgcgtcgtg
cgccagtacgccgagtgggtgggcgagccggtgacagagcttgagcgcatcaactgccac
cacaactacacggagcaggagaagcacttcgggaagaacgtgtggctctcacggaagggc
gcgatcaacgccgaggcagggcgtccgggtctcattccgggctcgatgggtacggcgtcg
tacgtggtcgtcggcaagggcaacgcgctctcgctcaactcgtcgccgcacggtgcgggt
cgtgcgttctcccgttctgcggcgcgcaagcgcttcactggtgacgagctgcgggaggcg
atgaagggcatcgagtaccgcgacaccgatgccttcatcgacgagatcccgggcgcgtac
aaggacatcgaccaggtgatggcggacgccgccgacctcgtcgagatccggcacacgctg
cgtcagatcgtcaacgtcaagggcgattag
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