Dermacoccus abyssi: FV141_04850
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Entry
FV141_04850 CDS
T06197
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
day
Dermacoccus abyssi
Pathway
day03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
day00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FV141_04850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
day03019
]
FV141_04850
03016 Transfer RNA biogenesis [BR:
day03016
]
FV141_04850
Enzymes [BR:
day01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FV141_04850
Messenger RNA biogenesis [BR:
day03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FV141_04850
Transfer RNA biogenesis [BR:
day03016
]
Prokaryotic type
tRNA degradation factors
FV141_04850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
ACBP4_C
KH_KhpA-B
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QEH92925
LinkDB
All DBs
Position
1004776..1007226
Genome browser
AA seq
816 aa
AA seq
DB search
MEGPEIQFAEAVIDNGSFGTRTVRFETGRLAKQANGAVLAYLDDDTCLLSTTTASKQPKE
HFDFFPLTVDVEERSYAAGKIPGSFFRREGRPSTDAILTCRLIDRPLRPAFKKGLRNEVQ
VVITVLAQNPDVQYDVLAINGASASTQISGLPFTGPIGGVRVSLIDGQWVAFPNFSDIER
SAFDMVVAGRLVGDDVAIMMVEAESTESTWNLVAEGTQAPTEEVVAEGLEAAKKFIRVLC
EAQVELAQQAAKEVQDFPVFLDYQDDVYGAVEKSAKDQTSAAMTIAGKAEREDKLDEIKD
ALKAELAGEGREFEGRESEVSAAFRSLQKQLVRERILREKVRIDGRGLADIRALSAEVEV
LPRVHGSAIFERGETQIMGVTTLNMLRMEQQIDSLSPVTRKRYMHHYNFPPFSTGETGRV
GSPKRREIGHGALAERALMPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNA
GVPLRAPVAGIAMGLVSAEIDGQTQYAALTDILGAEDAFGDMDFKVAGTREFVTAIQLDT
KLDGIPAQVLAGALTQARDARLHILDVMNEAIDAPDEMSPFAPRVLAVKIPVDKIGEVIG
PKGKMINQIQEDTGADLSIEDDGTVYIGATDGPSAEAARAAVNAIANPQMPEVGERFLGT
VVKTTTFGAFVSLLPGKDGLLHISEVRKLVGGKRIDAVEDVLKIGQKVQVELKEVDPRGK
LSLAVVEEAKAESANTPENTDAATAEAAAEVADSAGHMDPHSGSEDESGDKKPRQRRRGG
RGRGRGAEQGEGNAAADQLVDAGSDGNEAKATSEDA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgagatccagttcgccgaagccgtcatcgacaacggctcgttcggcacc
cgcacggttcgcttcgagacgggacgtctcgcgaagcaggccaacggcgcagtcctcgcc
tacctggacgacgacacctgcctgctgagcaccaccaccgccagcaagcagcccaaggag
cacttcgacttcttccccctcacggtggacgtcgaggagcgcagctacgcggccggcaag
atccccggctcgttcttccgtcgtgagggtcgtccctccacggacgcgatcctcacctgc
cgcctcatcgaccgcccgctgcgcccggccttcaagaagggtctgcgcaacgaggtccag
gtcgtcatcacggttctcgcgcagaacccggacgtgcagtacgacgttctcgccatcaac
ggcgcgtcggcctccacgcagatctccggtctgccgttcaccggcccgatcggtggcgtg
cgcgtctccctcatcgacggccagtgggtcgccttcccgaacttctccgacatcgagcgc
tcggcgttcgacatggtcgtcgccggccgtctcgtcggtgacgacgtcgccatcatgatg
gtcgaggccgagtccaccgagtcgacgtggaacctcgtggccgaaggcacccaggccccg
accgaagaggtcgtcgccgagggcctcgaggctgcgaagaagttcatccgcgtgctctgt
gaggctcaggtcgagctcgcgcagcaggccgccaaggaggtccaggacttcccggtgttc
ctcgattaccaggacgacgtctacggtgcggtcgagaagtcggccaaggaccagacgtcc
gctgcgatgacgatcgcaggcaaggccgagcgcgaggacaagctcgacgagatcaaggac
gcgctcaaggccgagctcgccggcgaaggccgcgagttcgagggccgcgagtccgaggtt
tccgccgcgttccgttcgctgcagaagcagctcgtgcgcgagcgcatcctgcgcgagaag
gtccgcatcgacggccgtggcctggcggacatccgtgcgctctcggccgaggtcgaggtg
ctgccgcgcgttcacggttccgcgatcttcgagcgcggcgagacccagatcatgggtgtc
acgacgctcaacatgctgcgcatggagcagcagatcgactccctgtcgccggtgacgcgc
aagcgctacatgcaccactacaacttcccgccgttctccacgggtgagacgggccgcgtc
ggttcgccgaagcgccgcgagatcggtcacggtgctctggccgagcgtgcgctcatgccg
gtgctgccgacgcgcgaggagttcccctacgccatccgtcaggtctccgaggctctcggc
tccaacggttcgacgtccatgggttcggtctgcgcctcgaccctgtcgctgctcaacgcc
ggtgtgccgctgcgcgccccggtcgccggtatcgcgatgggtctcgtctccgccgagatc
gacggtcagacgcagtacgcggccctcaccgacatcctcggtgccgaggacgcattcggc
gacatggacttcaaggttgccggtacccgtgagttcgtcacggccatccagctcgacacg
aagctcgacggcatcccggcccaggttcttgccggtgcactgacgcaggcgcgcgacgct
cgcctgcacatcctcgacgtgatgaacgaggcgatcgacgctcccgacgagatgtcgccg
ttcgccccgcgcgttctcgcggtgaagatcccggtcgacaagatcggtgaggtcatcggc
ccgaagggcaagatgatcaaccagatccaggaggacacgggcgctgacctgtccatcgag
gacgacggcacggtctacatcggtgccacggacggcccgagcgccgaggctgcgcgcgcc
gcggtcaacgcgatcgccaacccgcagatgcccgaggtcggcgagcgcttcctcggcacc
gtcgtcaagacgacgaccttcggtgcgttcgtctcgctgcttccgggcaaggacggcctg
ctgcacatctccgaggtgcgcaagctcgtcggcggcaagcgcatcgacgctgtcgaggac
gtgctgaagatcggccagaaggtccaggtggagctcaaggaggtcgacccgcgcggcaag
ctttcgctcgccgtcgtcgaggaggccaaggccgagtccgcgaacacgccggagaacacg
gacgccgcgacggccgaggctgctgccgaggtcgccgactccgccggtcacatggacccg
cactcgggttccgaggacgagtccggtgacaagaagccgcgtcagcgtcgccgtggcggt
cgcggtcgtggccgtggcgccgagcagggcgagggcaacgccgccgccgaccagctcgtc
gacgcaggctccgacggcaacgaggcgaaggcgacctccgaggacgcctga
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