Dermacoccus abyssi: FV141_05055
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Entry
FV141_05055 CDS
T06197
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
day
Dermacoccus abyssi
Pathway
day03030
DNA replication
day03430
Mismatch repair
day03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
day00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FV141_05055 (holA)
03430 Mismatch repair
FV141_05055 (holA)
03440 Homologous recombination
FV141_05055 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
day03032
]
FV141_05055 (holA)
03400 DNA repair and recombination proteins [BR:
day03400
]
FV141_05055 (holA)
Enzymes [BR:
day01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FV141_05055 (holA)
DNA replication proteins [BR:
day03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FV141_05055 (holA)
DNA repair and recombination proteins [BR:
day03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FV141_05055 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_gamma3
DNA_pol3_delta
Motif
Other DBs
NCBI-ProteinID:
QEH92962
LinkDB
All DBs
Position
1055864..1056844
Genome browser
AA seq
326 aa
AA seq
DB search
MNESSALPQLVLITGPERVLAQRALSHVLEALGSSHPDAEVIRLDALEYEPGRLTMDLSP
SLFGGHRVVVVRDLDEATDPLVDELSDVLKHPLDDAHLVVLHKGGNRAKRVLDAMKKAKA
HVIEAPAMKSDRDKSAFITNEFRIARRKITPEAVRALLEAAGKDTSELAAACKQLVDDTT
GVVDENVVATYHSGKVEATGFRVADAAIAGNAPEALRLLRHAFASGLDPVPVVAVLASQL
RQVAKVASAGGGRSAELAKQLGMPPWQVDRARGASRGWDGVRLGRAIQTVAAADFAVKGG
GRDPQYAVEHAVLEICKQRHAPPERG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaatcgtcggcgctgcctcagctggtgctcatcaccggccccgagcgcgtgctc
gcgcaacgagcgctctcgcacgtgctcgaggcgctcggttcgagccaccccgacgcggag
gtcatccgcctcgacgcgctcgagtacgagccgggccggctgacgatggacctgtcaccg
agcctgttcggcgggcaccgcgtcgtcgtcgtgcgcgacctcgacgaggccaccgatccg
ctcgtcgacgaactctccgacgtgctcaagcatccgctcgacgacgcgcacctcgtcgtc
ctccacaagggtggtaaccgcgccaagcgtgtcctcgacgcgatgaagaaggcgaaggcg
cacgtcatcgaggcgccggccatgaagtcggaccgcgacaagtcggccttcatcacgaac
gagttccgtatcgcgcgccgcaagatcacccccgaggccgtgcgggcgttgctcgaggca
gcgggcaaggacacgtcggagctggccgcggcgtgcaagcaactcgtcgacgacacgacg
ggcgtcgtcgacgagaacgtcgtcgccacctaccactcgggcaaggtcgaggccacgggc
tttcgggtggccgacgccgctatcgccggcaatgctcctgaagcgcttcgtctcctgcgt
cacgcgttcgcctccgggctcgacccggttccggtcgtggcggtcctcgcctcgcagctg
cggcaggttgccaaggtggcctccgccgggggaggacgcagcgctgaactcgccaagcag
ctcggtatgcccccgtggcaggtcgatcgtgcccgcggcgcgtcgcgcggctgggacggc
gtcaggttgggccgcgcgattcagaccgtggctgcggccgacttcgccgtcaagggcggc
ggacgcgatccgcagtacgctgtcgagcacgccgtgctcgagatctgcaagcagcgtcac
gcgccacccgagcgaggctga
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