Drosophila arizonae: 108610312
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Entry
108610312 CDS
T05886
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
daz
Drosophila arizonae
Brite
KEGG Orthology (KO) [BR:
daz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
daz03016
]
108610312
Enzymes [BR:
daz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108610312
Transfer RNA biogenesis [BR:
daz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108610312
Prokaryotic type
tRNA splicing ligases
108610312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
108610312
NCBI-ProteinID:
XP_017857818
UniProt:
A0ABM1NS82
LinkDB
All DBs
Position
3
AA seq
506 aa
AA seq
DB search
MVVRPYVEELKYLEKINDHCWRIKKGFQPNMNVEGVFYVNSRLEQLMLEELKNSCRPGAV
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMDDPLSVVSPGGVGFD
INCGVRLLRTNLFEKDVQSLKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWSASKMGIEEKGQVVVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARIN
SPEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFKTTPDDLDMHVIYDVSHNIAKVE
NHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLVGGTMGTCSYVLTGTERGM
QETFGSTCHGAGRALSRAKSRRNLDYKDVLDKLDQLGIAIRVASPKLVMEEAPESYKDVT
DVVDTCHAAGISKKCIKMRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcaggccttatgttgaggagctgaagtatctggagaagatcaatgatcactgc
tggcgtatcaagaagggcttccagcccaacatgaatgttgaaggtgtgttctacgtgaac
agccgcctggagcagctcatgctggaggagttaaagaattcgtgccgcccaggcgccgtt
ggcggcttcctgccgggtgtcaagcagatcgcaaatgtggccgcattgccgggcattgtt
ggccgttccattggactgccggacatccattcgggctatggttttgccatcggcaacatg
gccgcattcgacatggatgatccgctgtcagtggtcagccccggtggcgtcggattcgat
atcaattgcggtgtgcgtctgctgcgtaccaatttgttcgagaaggatgtgcagtcgctg
aaggagcagttggcgcaatcgctcttcgaccacatcccagttggcgtaggctccaaaggc
attataccgatgaacgcgcgtgacttggaggaagccctagaaatgggaatggattggtcg
ttgcgcgaaggctatgtctgggcggaggacaaagagcactgcgaggagtacgggcgcatg
cttaacgccgatccggccaaggtaagcatgcgcgccaaaaagcgtggcctgccccagctg
ggcacattgggcgccggaaatcactacgccgagatccaagtggtggacgagatatacgac
aagtggagcgcctcgaaaatgggcattgaggagaagggccaagtggtcgtcatgatacac
tcgggcagccgcggcttcggccaccaggtggccacagatgcccttgtcgaaatggagaag
gccatgaagcgcgacaagatcgagacgaatgaccgccaactggcctgcgcgcgcatcaat
tcaccagagggacaggattacctgaaggcgatggctgcggctgcaaatttcgcctgggtg
aaccgcagctcgatgactttcctcacgcgccaggccttcgccaagatgttcaagacgacg
cccgatgacctggacatgcacgtcatctacgatgtctcgcacaacatcgccaaggtagag
aaccacatggtggacggcaaggagcgcaagctgcttgtgcatcgcaagggctctactcgc
gccttcccccctcatcatccactaataccagtggactaccagctgaccggacaacctgtc
ctcgttggcggcaccatgggcacctgcagctacgtcctgaccggcaccgagcgcggcatg
caggagacttttggcagcacctgccacggcgcgggccgcgccttgtcacgcgccaagtcg
cgtcgcaatctggactacaaagatgtgctggacaagctggatcaactgggcatcgccata
cgcgttgccagccccaaactagtcatggaggaggctccagaatcatataaggatgtcact
gacgtcgtggatacctgccacgccgctggcatcagcaagaagtgcatcaaaatgcgtccc
attgcagttatcaagggctga
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