Drosophila arizonae: 108611269
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Entry
108611269 CDS
T05886
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
daz
Drosophila arizonae
Pathway
daz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
daz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108611269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daz03019
]
108611269
03041 Spliceosome [BR:
daz03041
]
108611269
Messenger RNA biogenesis [BR:
daz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108611269
Spliceosome [BR:
daz03041
]
Complex B
Other components
Prp19-related factors
108611269
Complex C
108611269
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_15
Mad3_BUB1_I
TPR_12
RPN7
PPR
TPR_8
ARM_TT21_C
ARM_TT21
TPR_10
Motif
Other DBs
NCBI-GeneID:
108611269
NCBI-ProteinID:
XP_017859286
LinkDB
All DBs
Position
3
AA seq
883 aa
AA seq
DB search
MSEKSTQPLQVELNFEEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNLVYERALK
ELPGSYKIWYNYLRTRRKQVRGRIPTDPMYEQVNNTFERALVFMHKMPRIWMDYGVFMSS
QCKITRTRHVFDRALRALPITQHGRIWPLYLKFVQRYEIPETALRVYRRYLKLFPEDAEE
YVAYLQEAQRLDEAAQQLAHIVDNEHFVSKHGKSNHQLWNELCDLISKHPHKVHSLNVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNKRMEQVANDEDANEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVKLYEDKPEEIINTYTEAVQTVQPKLAVGQLHTLWVEFAKFYEENGQVDDARVVFERG
TQVEYVKVEHLAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKVAYHDETETVQMRLY
KSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGLFLEEHNYYEEAYRAY
EKGIALFKWPNVYDIWNSYLTKFLKRYGGTKLERARDLFEQCLDNCPPEHAKYFYLLYAK
LEEEHGLARHAMAVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIYEKAIEALPE
QNMRHMCVKFAELETKLGEVDRARAIYSHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSVQATYNTQVNMMAAQFLNTNSGAAADAGAGSGSDAMRMLEEKARQAAAEAKQ
KPSQTTSSNIMFVRGETQGGSKTKDNTVVNPDEIDIGDSDEEDDDEDEAEDAAEQAPEGD
SAAATKTDAEGLIMKKLRFEQKAIPAKVFGGLKPSTQQDSDEE
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaaatcaacacagccgctgcaagtcgagctgaattttgaagaggaggatgtg
ccgtacgaggaagagattctacgcaatgcgtattccgtgaagcactggctccgctacatc
gatcacaaggctaaggctcccaataatggcgttaacttagtgtacgagcgcgcyttgaag
gagctgccgggcagctacaagatctggtataactacttgcgtacgcgtaggaagcaggtg
cggggccgcattcccacagatcccatgtacgagcaggtgaacaacacgtttgagcgtgcg
ctggttttcatgcacaaaatgccacgcatttggatggactatggcgtgttcatgagctcg
cagtgtaaaatcacacgcacccgccacgttttcgatcgtgcgctgcgtgccttgcccatc
acgcagcatggacgcatctggccgctgtacctgaagtttgtgcagcgttacgagataccc
gagacggcgctgcgtgtctacaggaggtatttaaaattgtttcccgaggatgcagaggag
tatgtggcctacttacaggaggcacaacgtctggacgaagcggcacagcaactggcgcac
attgtggacaacgagcattttgtgtcaaagcacggaaagtcaaatcaccagctatggaac
gagctctgcgatttgatctcgaagcatccgcacaaggtgcactcactcaatgttgatgca
attattcgtggtggtctgcgtcgctacacggatcagttggggcacctctggaactctctg
gctgactattatgtacgctcaggcctgtttgatcgtgctcgtgatatctacgaggaggcc
atacagacggtgaccacagttcgggacttcactcaagtcttcgacgagtatgcgcagttt
gaggagttgtcgttgaacaagcgcatggagcaggttgcaaaygatgaagacgccaacgag
gaggacgayattgacgtcgagttgcgtctctcgcgcttcgagtatttgatggaacgtcgt
ctgctgctgctcaacagcgtgttgctacgccagaatccccacaatgtgcatgagtggcac
aagcgggtgaaactgtatgaggacaagcctgaggagattatcaacacctatacggaggcc
gtgcagacggtgcagccgaagctggcagtggggcagctgcacacgctgtgggtggagttc
gccaagttctacgaggaaaatgggcaggtggacgatgcgcgcgtggtatttgagcgcggc
acgcaagtggagtacgttaaggtggagcacttggcggcagtgtggtgcgagtgggccgaa
atggaactgcgccagcagcaattcgaggctgcgctcaagctaatgcaacgcgccacggca
atgccaaagcgaaaggttgcctaccatgacgagacggagacggtgcaaatgcgtctatat
aaatccctgaaggtgtggtccatgtacgccgatctggaggaatcttttggcactttcaaa
acctgcaaggctgtgtacgagcgcatcattgacctgaagatttgcacgccacaaattatc
attaattacggcctgtttctggaggagcacaactactatgaggaagcctatcgtgcatac
gagaagggcattgcgctrttcaartggccgaatgtctacgayatatggaattcgtatytr
acgaagttcttgaagcgctatggtggcaccaaactrgagcgtgctcgcgatctwttcgag
caatgcctsgayaattgtccgccggagcatgccaagtacttctacttgctctatgccaag
ctggaggaggagcacggcctagcacgacatgccatggccgtgtacgaccgagcgaccagc
gccgtcaaagaggacgagatgttcgatatgtacaacatatttatcaagaaggcagccgaa
atttacggactgccacgcacacgcgagatctatgagaaggccattgaggcgctgccggag
cagaacatgcggcacatgtgcgtcaagttcgccgagctggagacaaagctgggcgaggtg
gatcgcgccagagccatctattcgcattgctcacaggtctgcgatcctcgcattaccgcc
gatttctggcagacctggaaggagttcgaggtgcgtcacggcaacgaggacacaatgcgt
gagatgttgcgcatcaagcgctcggtgcaggccacctacaacacccaggtcaacatgatg
gcagctcagttcctcaatacgaatagcggtgctgcagccgatgcgggcgctggctctggc
tcggatgccatgcgcatgctggaggagaaggcgcgacaagcggcagccgaggccaagcag
aagcccagccaaacgacttcttccaatattatgttcgtgcgtggcgaaacgcaaggcggc
tccaagaccaaggacaatacggtcgttaatcctgatgagatcgatatcggcgacagcgac
gaggaagatgacgatgaagatgaagcagaagacgctgcagagcaggcgccagagggcgac
tcagctgcagctacgaaaactgatgcggagggtctcattatgaagaagttgcgcttcgaa
caaaaggcaatacccgccaaggtcttcggtggcctgaaacccagcactcagcaagactcc
gatgaggaataa
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integrated database retrieval system
