Drosophila arizonae: 108614933
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Entry
108614933 CDS
T05886
Name
(RefSeq) uncharacterized protein LOC108614933
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
daz
Drosophila arizonae
Pathway
daz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
daz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108614933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daz03021
]
108614933
03019 Messenger RNA biogenesis [BR:
daz03019
]
108614933
Transcription machinery [BR:
daz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108614933
Messenger RNA biogenesis [BR:
daz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108614933
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
zf_PCFS4
p450
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108614933
NCBI-ProteinID:
XP_017864639
LinkDB
All DBs
Position
5
AA seq
886 aa
AA seq
DB search
MTLGTVLLLLFCILICGYYYLRHHYAYWIARGVPELRPRLFVGNLGGLLSMRSSPADFIG
EMYNHPDAQDKPLVGIHVFYKPALLLRDPELIKRIMVKDFAKFSNRYSNSDYKGDPLGSQ
NIFFLKNPAWKEVRLKLLDGQLHRIRFGHPSRELYIDDHWYEIYFGGPPVSLPIGNKLHV
LKAEGPPPNVDIGRVRRDLVVGKINMIVDAHTIVPLFLDGRQQTFHLGAEQHSLQFVDSF
LYALLDGQLQKLEYGGLPKSMKLNGGRNCFIRFGTLPKGVQAGKTHVQDMVYIKTEAPAE
PPQPPPLPVAGLPTVPAAAVATPEQPAAVAAVGVPTNTAPVVPLPEAAAAALSNLNIDEL
FQKLVSSGIIAGTTSNSSTVNVPALDTNSNSSKEATATTVAPAATVAPVVAATPAATVPA
VAPLEPIKRIDLTKPETIKTRQAAVIATLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQ
NRRERDSTRKPTSRRWYYDLNDWKQYEEIEDVEERERNFLESQGQQLGPDAIDEVSQQRS
LNSPVPSCAAGPTDVDRGCDMCHEKFEQFYNEELEEWHLRSAIRVDDKIYHPLCYEDYKA
SLNPPPVVDNDTTANEDVDMLNASDDNAMDTLIKLEDESDDVKKTSSTVLADDDDDDVIV
LPNEEPSVTEIVDDDDDEYVPVATATEPETELSKEKPTSSQQEDKQQQQSNEQQLHNEHH
QKVSENANESDVEIQEPNIPFTDLDNYVEKEPVPMLNVKIKEEPKDDDEEDDDGFEDVGT
VVQLLPLPEDEISILSSETLTHTIDSTASPATLERPASVTSLSLPANDDELELEPVAAAA
SSEADFNVEAEPEPVIELKPALRQVTLKKTKKVQNGIETSGLCSIM
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttggcacagtgctgcttctgctgttctgcatcctgatctgtggatattactac
ctgagacaccattatgcctattggatagcacgcggagtgcctgagctgcgtcctcggctg
tttgtgggcaacctgggcgggctgctgagcatgcgcagtagtccggcggatttcattggc
gagatgtacaatcatccggatgcgcaggataagccccttgtgggcattcatgtgttctat
aagccagcgctgctcttgcgcgatccggagctgattaagcgaatcatggtcaaggacttt
gcgaaattcagcaatcgctactcgaactcggattacaaaggcgatccgttgggctcgcag
aatatattctttctgaagaatccggcctggaaggaggtgcgcctgaagctgttggatggg
cagctgcatcgcattcgtttcggacacccctctcgggagctgtacatcgatgatcattgg
tatgagatctactttggtggaccgcccgtttccctgcccatcggcaataagttgcatgtg
ctgaaggcggagggaccgccgccaaatgtggacatcggtcgtgtgcgtcgagatttagtt
gtgggcaaaatcaacatgattgtcgatgcacacacaattgtgccgctgtttctcgatggc
cgccagcagacgttccatttgggcgccgagcaacactcgctccaattcgtggatagtttc
ctttatgcattgctagatggacagctgcagaagctggaatatgggggactgcctaagagc
atgaaattgaatggaggacgcaattgcttcatacgctttggcacgctgcccaagggcgtg
caggcgggcaagacccacgttcaagatatggtatacattaagactgaggctccagcggaa
ccaccacaaccgccgccactgccagtggctgggttgccaactgtaccagccgccgcagta
gcaacgcccgagcagccagcagctgttgcagctgtcggcgtgccaacaaatactgctcct
gttgttcctttgcctgaggcagcagcagctgctctaagcaatctcaacattgacgagctc
ttccagaagctcgtctcgtcgggcataattgctggtaccaccagcaacagcagcacagtc
aacgtacctgctttggatacgaattccaactctagcaaagaggcgacagcaacaactgta
gcaccagcagcaactgtggcgcctgttgtagctgcaacacctgccgcaactgtgcctgca
gtcgcacctctcgagcccatcaagcgcattgatctgacgaagccagagacaattaagaca
cgtcaggcggccgtgatagccaccctgtatttgggcatgcagtgcagcagctgtggcgtg
cgcttcccaccggagcagaccatcaagtatagtcagcatttggattggcatttccgtcag
aatcgaagggaacgcgattcgacacgcaagccaacgtcgaggcgttggtactatgatctc
aatgattggaagcaatacgaggaaattgaagatgtggaagaacgagaaaggaatttcctc
gaatctcagggccaacaattgggacctgatgccatcgatgaggtgtcccagcaacgttcg
ctcaattcacctgttcccagctgtgcagccggtccgacagatgtggatcgcggctgtgac
atgtgccacgagaaattcgagcagttctacaacgaagagctggaggaatggcatctacgc
tcagctatacgcgtagacgacaagatctatcatccactatgctacgaggactacaaagct
tcgctcaatccacctccagttgttgataacgacacgacagcaaatgaagatgtggatatg
ctaaatgctagcgatgacaacgccatggatacgctgatcaagctggaagatgaatcggat
gatgtcaagaagacatccagcacggtgctggccgacgatgatgatgatgatgtcattgtg
ctgcccaatgaggaacctagtgttacagagattgtcgatgacgacgatgatgaatatgtg
cccgtcgctacggcaaccgaaccagagacagagctgtccaaggagaagccaacaagcagc
caacaggaagataaacaacagcagcaatcgaatgagcagcagcttcataacgagcatcat
caaaaagtgtcagagaacgccaatgaatcagatgtggaaatacaggagccaaacattccc
tttaccgatctggacaactatgtagaaaaggagccagtgccgatgctcaatgtgaaaatc
aaagaagagccgaaggatgacgacgaagaggatgatgatggctttgaggatgtgggcaca
gtagtacaattgctgccgctgccagaagatgagatatccatattaagtagcgaaacatta
acccataccatcgattcgactgcatcgccagctacgctggagcgtccagcctcggtaaca
tctctctcattgccagccaatgacgatgagctggaactggagccagttgctgcagcagcc
agcagcgaggccgattttaatgtcgaagctgagccggagcctgtgatcgaactgaagccg
gcgctgcgacaggtgacgctgaagaaaacgaagaaagttcaaaatggcatcgaaacttcg
ggcctgtgctcgatcatgtag
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