Drosophila arizonae: 108619113
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Entry
108619113 CDS
T05886
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
daz
Drosophila arizonae
Pathway
daz03020
RNA polymerase
daz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
daz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108619113
09124 Replication and repair
03420 Nucleotide excision repair
108619113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daz03021
]
108619113
03400 DNA repair and recombination proteins [BR:
daz03400
]
108619113
Enzymes [BR:
daz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108619113
Transcription machinery [BR:
daz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108619113
DNA repair and recombination proteins [BR:
daz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108619113
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108619113
NCBI-ProteinID:
XP_017870931
UniProt:
A0ABM1PUP5
LinkDB
All DBs
Position
X
AA seq
1889 aa
AA seq
DB search
MSTTTDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGV
IDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNP
KIKEIVMKSKGQPRKRLAYVYDLCKGKTICEGGEDMDMTKDNQQVDPNKKPGHGGCGHYQ
PSIRRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWM
IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHDIAGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPT
PGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPT
VKLSNKVFEKRFKFDWSNERYMRKVFTDDVIKEMTDSSDAIQELESEWDRLVSDRENLRT
IFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGLLERCVIVTGNDR
ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRIS
PWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENK
FQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEF
KAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQF
YGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAET
DPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAIFMGGGSTP
SMTPPMTPWVNCHTPRYFSPSGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSS
PGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYASTSPRYA
STTPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNY
SPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSASP
HYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLY
SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSP
MYSPTAPSHYSPTSPAYSPSSPTFEESDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccacgacggattcgaaggcgccgttgcgccaggtgaaacgcgtgcagttcggc
attttatcacctgatgaaatacgccgaatgtccgtgacggagggcggcgttcagttcgct
gagaccctggaaggcggtcggccgaagctaggcggcttgatggatccacgccagggtgtg
atagatcggacgtcgcgctgtcagacgtgcgcgggcaatatgaccgagtgtccgggacat
tttgggcacattgatttagctaaacccgtctttcacatcggcttcataacgaagaccatc
aaaatcctgcgctgcgtttgtttctattgctccaagatgttagtctctccacacaatccc
aagatcaaggagattgtcatgaaatcaaagggtcagccacggaaacgcttggcttacgtc
tacgacctgtgcaaaggcaaaacgatttgcgagggcggcgaggatatggacatgaccaaa
gacaatcagcaagtggatccgaacaagaagcccggccacggtggctgcggtcactatcag
ccatcgatccggcgcactggcctggacttgacggccgaatggaaacacgtcaacgaggac
tcgcaggagaagaagatcatcgtctccgcggagcgtgtctgggagatcctcaagcatatt
accgacgaagagtgcttcatactgggcatggacccaaagtatgctcgacccgattggatg
attgtcaccgtgctgccagtgcctcctctagccgtccgcccggctgtagttatgttcggt
gcagccaagaaccaggacgatttgacccacaagttggccgacatcatcaaggccaacaat
gagctgcgcaagaatgaggcaagcggcgctgcggctcatgtcatacaggagaatataaag
atgctgcagttccacgtggcgacgctggtcgacaacgatatgcccggcatgccgcgcgcg
atgcagaagtcgggcaagccgctgaaagcgatcaaggcacgtctcaagggcaaggaggga
cgtattcgtggtaatttgatgggaaagcgtgtggatttctctgcacgaactgtcatcacg
cccgatcccaatttgcgcattgaccaggtcggtgtgccacgttcgatagcacaaaaccta
accttcccggagctggtgactccattcaacatcgatcgcatgcaggagctcgtgcgtcgc
ggcaattcgcaatatccgggcgccaaatacattgtgcgcgacaacggagagcgtatcgat
ttgcgtttccacccaaagtcctcggacctccatttgcagtgcggctacaaggtggagcga
cacttgcgagacgacgacctggtcatcttcaatcgccagccgacgctgcacaagatgagt
atgatgggtcacagagtgaaggtgttgccctggtccacgttccgcatgaatttgtcctgc
acatcgccctacaatgccgattttgacggcgacgagatgaatctccatgttccccaatcc
atggaaacgcgcgctgaagtcgagaatattcacataacaccgcgacagattattacgcca
caggccaacaaacccgtcatgggcattgtgcaggatacactgaccgccgtccgtaagatg
acgaaacgtgatgtgttcatcacgcgggagcaggtgatgaatctgctgatgttcctgccc
acgtgggatggcaagatgccgcagccgtgcatattgaagccgcgtccactgtggacaggc
aaacagatcttctcattgatcatacccggcaacgtgaacatgatacgcacgcactcaacg
catccagacgaggaggacgatggaccctacaagtggatatcgcccggtgacacaaaggtc
atggtagagcatggcgacctcatcatgggcattctctgcaagaagacgctcggcacgtca
gccggctccctgttgcatatttgtttccttgaattgggtcacgacattgccggacgcttc
tacggcaacatccaaacggtgatcaacaactggctgctgctcgagggccacagcattggc
atcggcgacaccatcgccgatccgcagacctacaacgaaatccaaatggccatcaagaag
gccaaggacgatgtcatcaacgtcattcaaaaggcccacaacatggagctggagccaacg
cccggcaatacgctgcgacagaccttcgagaacaaagtgaatcgcatattgaacgatgct
cgtgacaagactggtggatcggccaagaagtccctcacggaatacaacaatctaaaggcg
atggtggtgtccggctcgaagggctccaacattaacatctcacaggtcattgcttgtgtg
ggccagcagaacgtggagggcaagcgcataccatatggcttccgcaagcgcactctgccg
catttcatcaaggatgattatggtccagagtctaggggctttgtggagaactcgtatctg
gccggcctgacaccgtccgagttctacttccacgccatgggcggcagagaaggtttgatt
gatacggctgtgaagacagctgaaactggctacatccagcgtcgtctcatcaaggctatg
gagtctgtgatggtcaactacgatggcaccgtgcgtaactcggtcggacagctgattcag
ctgcgttacggcgaggacggcctctgtggcgagctggtcgagttccaaaatatgcccact
gtgaagctgtccaataaggtctttgagaagcgcttcaaattcgattggtccaatgagcgg
tacatgcgcaaggtgttcacagacgacgtcatcaaagagatgacggacagcagcgatgcc
atccaggagttggagtccgaatgggatcgcctcgtcagcgatcgcgaaaaccttcgcacc
atctttcccaatggcgactccaaggtggtgctgccgtgcaacctgcagcgcatgatctgg
aatgtgcagaagatctttcacatcaacaaacgcctgcccacggatctgtcgccgatgcgt
gtgatcagaggcgtgaagggattgctggaacgctgtgtcattgtcacgggcaacgatcgc
atctccaagcaggccaacgagaacgccacgctgctcttccagtgcctcatccgctcgaca
ttgtgcacgaagtacgtctccgaggagttccgcctgtcgaccgaggcattcgagtggttg
atcggtgagatcgagacacgcttccagcaggcccaggcaaatcctggcgaaatggtgggc
gccttggctgctcagagcttgggcgaaccggccacgcagatgacactgaacactttccat
ttcgctggtgtgtcctcgaagaacgtaaccctgggcgtaccgcgtctcaaggagattatc
aacatatcgaagaagccaaaggcgccgtctctcacagttttccttaccggcggcgccgct
cgcgacgcggagaaggcaaagaacgtgctgtgccgtctggagcatacgacgctgcgtaag
gtaacagccaacacggccatttactacgatccagacccgcagcggacggtcattgcggag
gatcaggagttcgtcaatgtctactatgaaatgcccgactttgatccgacgcgcatttcg
ccctggctgctgcgcatcgagctcgaccgcaagcgcatgacggataagaaactgaccatg
gaacagattgccgagaagatcaatgttggcttcggcgaggatctgaactgcatcttcaat
gacgacaatgcggacaagctggtgctgcgcatccgcatcatgaacaacgaggagaacaag
ttccaggacgaggacgaggcagtcgacaaaatggaggacgacatgttcctccgctgcatc
gaggccaacatgctctccgacatgacactgcagggcattgaggcgatcggcaaggtctat
atgcatctgccccagacggacagcaagaagcgaatcgtcatcaccgagacgggcgagttc
aaggccatcggcgaatggctgctggaaacggatggcacgtcgatgatgaaggtgctgtcg
gagcgagatgtcgatcccatacgcacatcctccaatgatatttgcgaaatcttccaagtg
ctgggcattgaagctgtgcgaaagtccgtggagaaggagatgaacgctgtgctacagttt
tatggcctctacgtgaactatcgtcatctggccctgctttgcgacgtgatgacggccaag
ggccacttgatggccatcacgcgccacggcatcaatcggcaggatacgggcgcccttatg
cgttgctccttcgaagaaactgtggacgtgttgatggatgcagctgcgcacgccgagacc
gatcctatgcgtggtgtctccgagaatatcataatgggccaattgcccaaaatgggcact
ggttgctttgatctgctgctggacgcggagaagtgtcgctttggcattgagattcccaat
tctctgggcagcagcatgctgggcggtgctgccatctttatgggcggtggctccacgcca
agtatgacgccgccaatgacgccatgggtgaattgccatacaccccgttacttttcgcca
tccgggcatgtaagcgccatgacaccgggtggacccagtttctcgccctcggccgcttca
gacgcctctggcatgtcgcccagctggtcgccggcacatccgggctcatcgcccagttcg
ccaggcccttcgatgtcgccgtatttccccgcttcgcccagcgtttctccatcttattcg
cccacgtcgccgaattacacggcttcgtcgccgggcggcgcctcaccgaattattcgcca
tcgagccccaattattcgcccacatcgccgctttatgcgtccacaagtccgaggtacgcc
tcgaccacgcccaacttcaacccacaatcgacgggatattcgccttcgtcgtcgggctat
tcgcccacgtcgcctgtgtactcccccacgtcgaatttccagtcgagcccgtcgtttgcg
ggaagcggcagcaatatgtattcgcctggcaatgcatattcgccgagctcgtcaaattac
tcgcccaattcaccgtcttattcaccaatgtcgccctcatattcgccgtcaagtccatcg
tactcgcccacgtcgccctgttactcaccgacatcgccttcgtactcgccgacttcgccg
aactacacgcccgtcacgccttcgtattcgccgacgtcgcccaactactcggcgtcgccg
cattactcgccggcatcgccggcctactcacagacaggcgtcaaatattcgccgacatcg
ccaacgtattcgccgccctcgccgtcatacgacggctcgccaggttcgccgcagtacacg
ccaggctcgccacaatattcgccagcctcgcccaaatattcacctacttcgccgctgtat
tcgcccagttcgccgcagcactcgccgtcgaaccagtacagtccgacaggatccacatat
tcagcgacaagtccacgctattcccccaacatgtccatctattctccgagcagcaccaaa
tattcacccacgtcgcccacgtacacgccgacagcgcgaaactattcgcccacttcgccc
atgtactcgccgacagcgccctcgcactacagtccgacgagtccggcgtattcgccgagc
agtcccacattcgaggaaagcgacgattag
DBGET
integrated database retrieval system
