Drosophila arizonae: 108619155
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Entry
108619155 CDS
T05886
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
daz
Drosophila arizonae
Pathway
daz03013
Nucleocytoplasmic transport
daz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
daz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108619155
03015 mRNA surveillance pathway
108619155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daz03019
]
108619155
Enzymes [BR:
daz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108619155
5.6.2.5 RNA 5'-3' helicase
108619155
Messenger RNA biogenesis [BR:
daz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108619155
mRNA cycle factors
Common to processing body (P body) and stress granule
108619155
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
AAA_22
NPHP3_N
nSTAND_NTPase5
ATPase
nSTAND3
SRP54
AAA_16
UvrD-helicase
AAA_32
AAA_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
108619155
NCBI-ProteinID:
XP_017871013
UniProt:
A0ABM1PUX8
LinkDB
All DBs
Position
X
AA seq
1204 aa
AA seq
DB search
MSVDTYAPSSALSFLDMDDNELLRGADTQPTQYDYRDFTMPSTTQSQTQGDQLDLQSRRV
SVQNNDIHSRLASITNDLADLQFEEEDDENGVGGNSAYVKELPPHACKYCGIHDPATVVM
CNNCKKWFCNGRGSTSGSHIINHLVRAKHREVTLHGDGPLGETILECYSCGVRNVFVLGF
IPAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLHWLVKQPSEQGQLRARQ
ISAAQINKLEELWKDNIEATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEADY
DKKLKESATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELYNPWSE
IGHVIKVPDNFGDDVGLELKCSSNAPVKCTSNFSVDFIWKCTSFDRMTRALRNFAVDRNS
VSNYIYSRLLGHGRADGSDEVLFRGPQPKLYSAPHLPDLNRSQVYAVKHALQRPLSLIQG
PPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAI
DSPVSFLALHNQIRNMETNSELKKLQQLKDETGELSSADEKRYRSLKRGAENQLLEAADV
ICCTCVGAGDMRLSRIKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMC
KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRL
KLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGII
TPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFL
NDPRRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHF
QKPKKLVNNMNIGAHFMSTMMADAKEVLVPGSIYERTSGYGRQMSGNSNQNLNGGHYAAN
TYGSVGGAIGAAGAAGGNMSNAAYGAGNGSAGGNNNYGTAGGVGVGGGSGNASNWPTAHL
HDSIGYISNDHGVAALGNMPVPVGMFMNMSSLPPRFYNHHQQAIMAAKQNRAMQNQSGFA
APLVTGKKNSKLSKGSRNSNANSIHSGAGAGGGGTATLMSTTTTMTTTTTAITSATSSMG
STPFSQQPSALSLQMTQPSGFALSQQPELSQDFGQISQMDGLLSQDVSFNVSGERSLNQF
SQPY
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtatgcgccgagctcggcgctctccttcctggatatggatgacaat
gagcttttgcgtggcgccgatacgcagccgacacagtatgattatcgtgactttaccatg
ccgtccacaacgcagagccagacccagggcgatcagctggatttgcagtcgcgccgcgta
agcgtgcaaaataacgatattcattcacgattggcctctatcaccaacgatttggccgac
ttgcaattcgaagaggaggacgatgagaacggcgtcggtggcaattcggcatatgtcaag
gagctgccgccacatgcctgtaaatattgtggcattcacgatccagccaccgtggtcatg
tgcaacaattgcaagaagtggttctgcaacggtcgtggcagcacctctggctcgcacatt
attaatcatctcgtgcgtgccaagcatcgtgaggtgaccctgcacggcgacgggccactg
ggcgagaccatactggagtgctattcgtgcggtgtacgcaatgtatttgtcttgggcttc
atacccgccaaggcggattcggtggtggtgctgctgtgccgtcagccgtgcgccgctcag
aactcgctgaaggacatgaactgggatcaggagcagtggaagccactcatagccgatcgc
tgctttttgcactggctagtgaagcagcccagcgagcagggacagctgcgggcacgtcaa
atatctgcagcacagattaacaagcttgaggagctttggaaagacaatattgaggcaaca
tttcaggatttggaaaagcccggcattgactcggagccggctcatgttctgctgcgctat
gaggatggctatcaatacgagaaaacctttgggccgttggttcgtcttgaagctgactat
gacaagaagttgaaggagtctgctacacaggagaatatcgaggttcgctgggatgtgggc
ttgaacaagaagaccatcgcttattttacgcttgccaaaaccgattcggacatgaagctc
atgcatggcgatgagctgcgtctacgctacgtgggagagctatataatccgtggagcgag
attggtcatgtcattaaggtgcccgataactttggcgatgatgtcggcttggaacttaag
tgctcctcgaatgccccggtcaagtgcaccagtaactttagtgtggacttcatctggaag
tgcacatcattcgatcgcatgactcgggctctacgcaactttgccgtggatcgcaattcg
gtgtcgaattacatatactctcgcctgctgggccatggacgcgccgatggcagtgatgag
gtgctatttcgtgggccacagcccaagctgtacagtgctccccacttgccggacctcaat
cgttcacaggtgtatgccgtgaagcacgccttgcaacgcccactcagtcttatccaagga
ccgccgggtacgggcaaaacggtcacgtcggccactatcgtctatcagctggtgaagcaa
cacggcggcacagttcttgtttgcgcgcccagcaacactgctgtcgaccaactgactgag
aagatccatcgtaccaacctgaaggtggtgcgcgtctgtgccaagagccgtgaggccatc
gacagtccggtcagctttctagcacttcacaatcaaatccgaaacatggaaaccaattcg
gaactgaagaagctgcagcagctcaaagacgaaaccggcgagctgagctcggccgatgag
aaacgctatcgcagcctgaaacgtggcgccgagaaccagctgctcgaggcggccgatgtc
atctgttgcacctgtgtgggtgccggagatatgcgcctgtcgcgcatcaaattcacatcg
atactgattgacgagtccatgcagtcgacggagccggagtgcatggtgcccgttgtgctg
ggcgcaaagcaattgattctagtcggcgatcactgccagctgggcccggtggtaatgtgc
aagaaggcggcacgcgccggcctctcccagagtctgttcgagcgcctggtggtgctgggc
atacgcccgttccgcttggaagtacaatatcgcatgcatccggagctgtcacagtttccg
tccaacttcttctatgagggctcgctgcagaatggtgtctgtgcggaggatcgtcgcctc
aaactggacttcccatggccgcaaccggagcgtccgatgttctttttagttacacagggc
caggaggaaatcgctggctcgggcacatcttttctcaatcgcaccgaagcggctaacgtg
gagaaaatcacaacacgcttcctcaaggcgggcatcaagcccgagcaaatcggaatcatt
acgccctatgagggacagcgtgcctatttggtccagtatatgcagtaccagggcagcttg
cactcgcgcctttaccaggagattgagatagccagtgtggatgcgttccagggtcgcgag
aaggacatcatcattatgtcctgcgtgcgctcgaatgagcgccagggcattggcttcctc
aacgatccacgacgcctcaatgtggccttaacgcgtgccaaatacggcatcatcatcgtg
ggcaatcccaaggtgttggccaagcagcagctttggaatcatttgctcaacttctacaag
gatcgcaaggtgctagtcgagggctcattgaacaatctgaaggagtcgctcatccacttc
cagaagcccaagaagctggtgaacaacatgaacatcggcgcccatttcatgtccaccatg
atggccgatgccaaggaggtgctggtgcccggctccatatacgagcgcaccagcggctac
ggccgccagatgtccggcaactccaatcagaatctgaatggcggacattatgctgccaat
acgtatgggtctgttggcggcgcaattggcgccgctggtgctgccggtggcaacatgtcg
aatgccgcctatggcgccggcaacgggtccgctggcggcaacaacaactatggcactgct
ggtggcgtcggagtcggcggcggctctggcaacgcatccaattggccaactgcccacttg
catgactcgattgggtacatatcgaatgatcacggggttgccgccctgggcaacatgcct
gtgccggtgggcatgttcatgaacatgagcagcctgccaccgcgtttctacaaccaccat
cagcaggcgatcatggcggccaagcagaatcgcgccatgcagaaccagtccggttttgca
gctcctctagtcactggcaagaagaacagcaaattgtctaaaggatcgcgcaacagcaat
gcaaactcgatccactctggagctggtgctggtggaggcggtacagcgaccttaatgtcg
acgacaaccactatgacaacaacaaccacagcaatcacgtcggccacatcatcgatggga
tcgacaccattcagtcaacagccgtcggctctgtcgctgcagatgacacagccgagcgga
ttcgccttgtcacagcagccggagctgtcgcaggactttggccagatttcgcaaatggat
ggactgctctcacaggatgtctccttcaatgtgtcgggcgaacgcagtttgaatcaattc
tcgcaaccttactga
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integrated database retrieval system
