Desulfomicrobium baculatum: Dbac_0371
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Entry
Dbac_0371 CDS
T00963
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dba
Desulfomicrobium baculatum
Pathway
dba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dbac_0371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dba03400
]
Dbac_0371
Enzymes [BR:
dba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Dbac_0371
DNA repair and recombination proteins [BR:
dba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dbac_0371
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
RecD_N
AAA_22
NAT10_TcmA_helicase
AAA_16
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_28
AAA
NACHT
NPHP3_N
UvrD_C
DEAD
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ACU88498
UniProt:
C7LVF6
LinkDB
All DBs
Position
complement(438696..440462)
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AA seq
588 aa
AA seq
DB search
MFASPAILPRLAASTLFSEADLYQARFAASLAREGHANLVAGLTALVSLAVREGHVCLHL
GDEGVRERLAALGLDGTHACQLTGVVGAPGSGLPLILDGERLYFSRFFRDEEALARAFMR
LAGAPPRDIPADLLPDIFKTKGDETDWQDVACFAALRSRLCVISGGPGTGKTTTVARILA
LASRMHTGANFRIRLAAPTGKAASRMTEALAEAFPEGSQLPELNACLAQGAQTVHRLLGW
SSGGFRHCQGNPLPLDMLVVDEASMLDLELAARLMDALPDEASLVLLGDRNQLASVEAGA
VLANLCREDIVNAFSPDFTAYAAKAGAQGLTATGIPVPLTDHVVELKKSWRFGQHSGIAA
LSTLIRDGQAQMAGELLVEGRTDLEMLPCTGQANLTATLTPLLREAFRGLGGTTDPTRAF
EIFGTLRLLSPVRKGPRGTEALNRLAREALHESASNYWYPGRPVMILENDYNLGLFNGDV
GIALHVEGTLRVFFAGTEGLESHSPARLPRHETCYAMTVHKSQGSEFGHTVLILPEEPCP
VLGRELLYTALTRAKKRFTLLGTAEQVKDAIESPARRDSGLGEMLTST
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccagccccgccatcctgccccgacttgcggccagcaccctcttttccgaggcc
gacctttaccaggcccgctttgccgcctccctggcccgggaaggacacgccaacctcgtg
gccggtttgaccgccctcgtttccctggccgtgcgcgaggggcacgtctgcctgcacctc
ggcgacgagggcgtccgcgaacggctggccgccctgggcctggacgggacgcacgcctgc
cagttgacgggtgttgtcggtgcgccgggttccgggctgccgctcattctggacggcgag
cgcctgtatttctcccgcttcttccgcgacgaagaggccctggcccgcgccttcatgcgt
ctggctggcgcgccgccccgggacatcccggcagacctgctgcccgacatcttcaagacc
aagggcgacgaaaccgactggcaggacgtggcctgctttgcggccctgcgcagccgcctc
tgcgtcatctccggcggccccggcacgggcaaaaccacaaccgtagcccgcatcctggcc
ttggcgtcccgcatgcacactggcgcgaattttcgcatccgcctggccgcgcccacgggc
aaggcggcctcgcgcatgaccgaagctctggccgaagcctttcccgagggcagccagctg
cctgaactgaatgcgtgcctcgcacaaggcgcccagacagtgcaccgcttgctgggctgg
agttccggaggcttccgccactgccaaggcaaccccttgccgctcgatatgcttgtcgtg
gacgaagcctccatgctggacttggaactggccgcgcggctcatggatgccttgccagac
gaggcgagtctggtgctcctaggggaccgcaaccaattggcctcggtggaggccggagcc
gtcctggccaatctctgccgggaggacatcgtaaacgccttctcgccggattttacagct
tacgccgccaaagccggcgctcagggactgactgcgactgggattccagtcccgttgacc
gaccatgtagtggaactgaagaaaagctggcgcttcggccagcacagcggcatcgcagcc
ttgagcacgctcattcgcgacggtcaggcccagatggccggcgaactgctggttgaagga
cggactgatctggagatgttgccctgcactgggcaagcgaacctgacggccacgctgacg
ccgcttctgcgtgaagcattcaggggcctcggagggacaaccgaccccacgcgggcgttc
gagattttcgggaccctgcgcctgctctcgccggtccgcaaaggaccgcgcggcaccgaa
gccctcaaccgcctggcccgcgaagccctgcacgaatcggccagcaactactggtatcca
ggccgacccgtcatgatcctggagaacgactacaatctgggactgttcaacggagatgtg
ggcatcgccttgcatgtggaggggaccctgcgggtgtttttcgccggaaccgaaggactg
gagtcccattccccggcccgactgcccaggcacgagacatgttacgccatgaccgtgcac
aagagccagggctcggagttcggacacaccgtgctgatcctgccggaagaaccctgcccg
gtcctgggtcgcgaacttctgtacacggccctgacccgcgccaagaaacgcttcacgctg
ttgggcacggctgagcaggtcaaggatgccatagagagcccggcccgccgcgattcgggg
ctaggggagatgctgacaagtacctga
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