Desulfomicrobium baculatum: Dbac_1279
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Entry
Dbac_1279 CDS
T00963
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dba
Desulfomicrobium baculatum
Brite
KEGG Orthology (KO) [BR:
dba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dba03016
]
Dbac_1279
Enzymes [BR:
dba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dbac_1279
Transfer RNA biogenesis [BR:
dba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dbac_1279
Prokaryotic type
tRNA splicing ligases
Dbac_1279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACU89380
UniProt:
C7LRZ7
LinkDB
All DBs
Position
complement(1413119..1414237)
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AA seq
372 aa
AA seq
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MNITTEKPYRIYAEVLEQEALLQFESAMNQPFTIRGALMPDAHTGYSLPIGAVVATEGVI
VPAWVGYDIGCGMCALPTNHSADEIRAQGREIFERIYKAVPVGFAHNTKETAWPEGDDLP
RSDQMQEIFSRNGLKQLGSLGGGNHFAEIGEDETGKVWIVLHSGSRGIGHATASHYMRLA
SEGNKAKEGHFALSVSSEAGKNYIDDLAFCLEFALANRREMMRRILDVIDSVVLGVSPAD
WSQLINRNHNHAELKDGMWIHRKGATHAEAGMMGVIPGNMRDGSFIVRGKGNPEALWSSS
HGAGRVLGRKQAKNTLDVQQFAETMNGVIAKVSKDTLDESPFAYKSIFEVMRQQENMVET
VARVRPIINIKG
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcactaccgaaaaaccctaccggatctacgccgaagttctggagcaggaagcg
ctgctccaatttgaaagcgcgatgaaccagcccttcactatccgcggagcgctgatgccc
gatgcgcacactggatactctctcccgatcggcgccgttgtggccacagaaggggtgatt
gtgccagcctgggtcggatatgatatcggatgcggtatgtgcgctttgccaacaaaccat
agcgcggatgaaattcgtgcccaagggcgcgagattttcgaaaggatctacaaggctgta
cctgtaggttttgcccacaataccaaagaaactgcgtggcctgaaggggacgacttgcct
cgtagcgaccagatgcaggagattttttcaagaaacggactcaagcaacttggaagcctt
ggtggtggcaaccatttcgccgagataggcgaagacgaaacgggaaaagtgtggattgtg
ctgcattccggcagcaggggcattggtcatgccaccgcctcacattacatgcgtctggca
agtgaaggaaacaaggccaaagaaggacactttgccttgtcagtctcaagcgaagctgga
aagaattacatagacgacttggccttttgcctggaatttgcgctggctaatcgccgcgaa
atgatgagacggattctcgacgttattgattctgtcgtactaggtgtatccccggcggat
tggtcgcagctcatcaatcgaaaccataatcacgcagagctgaaagatggaatgtggatt
catcgtaagggagcaacccatgccgaagccggcatgatgggcgtgataccgggcaacatg
agggacggcagttttatcgttcgcggaaagggaaatccggaagccctgtggtccagctct
catggcgcgggccgggttcttggccgcaagcaggcaaagaataccttggatgtgcagcaa
tttgccgaaaccatgaatggcgttatcgccaaagtgtccaaggatactctcgatgaatca
ccgtttgcctacaagtcgattttcgaggtgatgcggcagcaagaaaacatggttgagact
gtagcccgtgtacgtccgatcatcaatattaagggctaa
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