Metallumcola ferriviriculae: MFMK1_000222
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Entry
MFMK1_000222 CDS
T10258
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dbc Metallumcola ferriviriculae
Pathway
dbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MFMK1_000222 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbc03400
]
MFMK1_000222 (mfd)
Enzymes [BR:
dbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MFMK1_000222 (mfd)
DNA repair and recombination proteins [BR:
dbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MFMK1_000222 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
Cas3-like_C_2
AAA_22
AAA_30
MFD_D3
AAA_5
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WRO20452
UniProt:
A0AAU0UGS0
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All DBs
Position
complement(210342..213860)
Genome browser
AA seq
1172 aa
AA seq
DB search
MDVAGLIGLLKDSPPAKALTHGLRTGLKDMLAYGISGSARALYAASLVDSGYQVLIVTAN
SEEAKKINADLEAVFLPGRTAYFPAREIMPYEVYAHSNELQNQRLAVLKRLAIGELDCVV
TPVGALSASIVPADILSKAMLHFENEHSLDLNSLSEQLVSRGFERVDRVENAAQFSIRGG
IVDIYPVDEKPVRIELFGETIDSIRYFDPTTQRSQERLEKIVIPPAQELIITEERKKLGR
QAIEAEFISVKQKLLAGKKHAAVERLSDKVQSALDKLEDGRWTAGLEQFHTFFYPDASTL
IDYFRRSPVVIWNEISRIGEEAKRLNKERNDTYAQLLIDGALLPSQNNNYLRIEELYSQN
CHCRIYMSLLPKGLPEEIKPRQVVNFEIHAAHSFLGKMDMLAADIKRWSQKKYRILLFTA
DQERAKRLQSHLWDMGIELELADKINLTPEAGKAVICWPGLQQGFQLLGEKLIVLTDVEL
YGVKRQSRKSFKKGKKTNILHDLKAGDYVVHESHGVGRYLGIEQLEVGGAFKDYLHLQYA
GEDKLYLPTEQSSLIKPYVGAEDKVPKLNKLGGNEWARVKRRVKQSVEDLAGELLALYAA
RETAKGYALPSDSEWQKEFEEQFPYEETPDQLIAIDEVKADMEQPKPMDRLLVGDVGYGK
TEVAMRAAFKVCEAGKQVAILVPTTVLAQQHYLNFQERFQRFPIKLAVLSRFTSRGEQKN
IIEGLQRGEVDIVIGTHRLLSGDVRFKDIGLLIIDEEQRFGVKHKERLKELRHQVDALTL
TATPIPRTLHMSLIGVRDMSVIETAPEERYPVQTYVVEHSPELVRDAIYREINRGGQVFY
VFNRVRGLQKKAAEIQEMVPEASVGVGHGQLPERELEQVMLDFINAKYDVLVCTTIVENG
LDIQNANTLLVDEADRMGLSQLYQLRGRVGRSNRVAYAYLTYRKDKVLNAVAEKRLSAIR
EFTELGSGFKIAMRDLEIRGAGNILGPEQHGHMLAVGFDLYCQLLEDAVKNLRGEIAPAA
DKPPLIELKVNAYISNEYITDSGEKIEFYRMLTLVNSLSAVENAVQSVTDRYGKPPAPVG
NLLLLAKMRVLGIQLGLEAIKQVSEERVELLFNRGVDIGAEKLMELAQKFPRRLSISVVQ
GLKLQVRSKRLQDRELLVLLESILVEAKALVG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgcggggttgattggtttattaaaagatagtccgccggcaaaggcactgaca
cacgggcttcggaccggcttgaaagatatgctggcctatggtattagcggctcggcaagg
gccttatatgctgcatctttggttgatagtggttaccaggtgctgatagttactgctaac
agtgaagaggcaaagaagattaatgctgacttagaagctgtatttttacctggcaggaca
gcctatttccctgctcgagaaataatgccctacgaagtttatgctcatagtaatgaactt
caaaaccagcgtttggcagttttgaaaaggctcgcaataggggaattggattgcgtagtt
actccggttggtgcactgtctgcatcaattgtacctgctgacatattgtctaaggcgatg
ctgcactttgagaatgagcattcattggaccttaatagtttgtcagagcaattagtgagc
agaggttttgaaagagttgacagggtggaaaatgctgctcaatttagtattcgtggtggg
attgtggatatttatccggtggatgagaagccggtaaggatagaactttttggggaaacg
attgattctattagatattttgatcctacaactcaacggtcgcaggaaaggctagagaaa
atagtcatacctcccgcacaggagttaataattactgaagagagaaagaagttaggcagg
caggctattgaagctgagttcattagtgttaaacagaaactgctggcaggaaaaaagcat
gccgcagtggagcggctaagtgataaagttcaatccgctcttgataaactagaagacggg
cgctggacagcgggtttggaacagtttcacactttcttttatcccgacgccagtacctta
atagattattttagacgctcaccggtggtaatttggaacgaaatttcacgcattggggaa
gaagccaagcgtcttaacaaggaaagaaatgacacttatgcacagcttctcattgacggg
gccctgctgccctcccaaaacaacaattacctcagaattgaagaactatacagccagaac
tgccactgtcgaatatatatgtcgttgttacctaagggattgccggaggaaatcaagccc
agacaggtggtaaactttgaaattcatgcggcccactccttcttgggtaaaatggatatg
ctggcggcagacataaaacggtggtcacaaaagaaataccgcatccttctttttactgcg
gatcaggagcgagctaagcggctgcaatcgcatctttgggacatgggaatagaattggaa
ttggccgacaagataaacctgacgccggaggcgggaaaagcagttatttgttggccgggc
ttacagcaaggttttcagctactcggagagaaattaattgttttgacagatgtagagctt
tacggggtcaaacggcaaagcaggaagtcatttaaaaaaggcaagaagacgaacatttta
catgacttaaaagccggtgattacgtagttcacgaaagccatggcgtcgggcgttatctc
ggtattgaacagttggaagtgggtggggccttcaaggattacttgcatctgcaatatgcc
ggggaagacaaattataccttcccacagaacagtcttctttaattaaaccttacgttggc
gctgaagataaagtccctaagctcaataagctcggtggcaatgaatgggcccgggtgaaa
cgccgggtgaaacagtctgtggaggacttggctggggaactgctggcactttatgccgcc
cgggaaactgcaaagggatacgctcttccttcggacagcgaatggcagaaggaatttgaa
gaacagttcccttatgaggaaacacctgaccagctaatagcaattgatgaagtgaaagca
gacatggaacagccgaaaccgatggaccgtttactggtgggagatgtgggttatggtaaa
acagaggtagcgatgcgtgctgcgtttaaagtgtgtgaagcaggtaagcaggtagcaatt
ttggtaccgacaactgtgttggctcaacagcattatcttaactttcaggaacggtttcag
cgttttccgataaaattagctgtattaagccgcttcaccagtaggggggagcaaaaaaac
attattgaaggattacaacggggtgaggtcgacattgtcattgggacacatcggctgctg
tctggtgatgtccgctttaaagatattggtcttttaataatcgatgaggaacaacgtttc
ggtgtgaagcataaggagcggttaaaagagttgaggcatcaggtagacgcacttacgctg
accgccactcccattccaagaacgctgcacatgtctctgatcggtgtgcgggatatgagt
gtaattgagaccgcaccggaagaaagatacccggtacagacttatgtggtggagcacagt
ccggaattggtacgggatgccatttatcgggaaataaaccggggcggacaggtattctat
gtctttaaccgggtgcgggggctgcaaaaaaaggcggcggaaatccaagagatggtaccg
gaggcttctgtaggtgtcggacatggacagctgccagagcgtgagctggaacaagtaatg
ttggattttatcaatgccaagtacgatgtgctggtatgtacaaccattgtggagaatggc
ttggacatacaaaatgccaatactttgctggtagatgaggcagaccgcatggggttatca
cagctttaccaacttcggggcagggtggggcgcagtaatcgtgttgcttatgcctatctt
acatatagaaaggataaagtgctgaacgctgtcgcggaaaaaaggttatccgcaatcagg
gaatttactgaattgggttcaggatttaaaattgccatgagagatttggaaattcgcggc
gccggcaacatcttgggaccggaacaacacggccatatgctggcggtaggttttgaccta
tactgtcagctgttggaggatgcagtcaaaaacctgcgtggggaaatagcgcccgcagcc
gacaaaccgccgttgatagagttgaaggtgaatgcttatatttccaatgaatatattacc
gactccggggaaaagattgagttctatcggatgcttactttagtgaacagcttgtcagca
gttgaaaatgctgtacaatcagtaacggaccgatatggtaaaccgccggcgccggtggga
aatttgcttctacttgctaaaatgagggtgctgggaatacaactaggattggaagccatt
aaacaagtgagtgaggaacgggtagaacttctgtttaataggggtgtggatataggagct
gaaaagctgatggaactggctcagaagtttccgcggcgtttaagtatctcggtggttcaa
ggtctaaagttgcaggtgcgcagcaaacgcctgcaggatagggaattattggtgctgctg
gaaagtatcctcgtggaggctaaagcccttgtaggctag
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