Metallumcola ferriviriculae: MFMK1_000597
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Entry
MFMK1_000597 CDS
T10258
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dbc Metallumcola ferriviriculae
Pathway
dbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MFMK1_000597 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dbc03021
]
MFMK1_000597 (rho)
03019 Messenger RNA biogenesis [BR:
dbc03019
]
MFMK1_000597 (rho)
Transcription machinery [BR:
dbc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MFMK1_000597 (rho)
Messenger RNA biogenesis [BR:
dbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MFMK1_000597 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
Spore_III_AA
OB_RNB
AAA_22
AAA
ATPase_2
S1CSD-TOTE-2
AAA_24
HHH_RecD2
Motif
Other DBs
NCBI-ProteinID:
WRO20807
UniProt:
A0AAU0UK95
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All DBs
Position
583674..584924
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AA seq
416 aa
AA seq
DB search
MNISDLEGKTMAELLKVARGLEVSGYSKLRKKELIFEILKAKTEKDGHLFAQGVLEILPD
GYGFLRPFAYLPSNDDIYVSPSQIRRFDLRTGDLVAGQVRPPKDMERYFALLRVETVNNL
DPELSQERLHFDGLTPIYPLERLTLETEKTGIATRIIDLIAPLGKGQRGLIVSPPKAGKT
TLLKRIANSITANSPDTELLVLLIDERPEEVTDMQRSVAGEVVSSTFDEPPENHVKVADM
VLERAKRLVEHKKDVIILMDSITRLARAHNLVVPPSGRTLSGGVDPSALHKPKRFFGAAR
NIEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRRLAERRVFPAIDVKRSGT
RKEELLLNKEELELTWKFRHTTNNKAPHEVTEMLIDALKKTSRNADLLRVLPQLFP
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaatatttccgatcttgaaggtaagaccatggcggagcttttaaaagtggcccgcggg
cttgaggtttccggatactctaagctgcgtaaaaaagaactgatttttgaaatccttaaa
gccaagactgaaaaggatgggcatctatttgctcagggggtactggagatacttccggat
ggatatggttttttacgtccgttcgcatacctgcccagcaatgatgatatttatgtatcc
ccgtctcagataagacgttttgacctgcgtaccggggatttggtagcaggccaggtgcgt
ccgcccaaggatatggaacgctattttgctctgctcagggtggaaactgtcaataatctg
gacccggaattgtctcaggagagattgcattttgatgggctgacgcccatttatcccttg
gagcggctgactctggaaacggaaaaaacaggaatagctacccgcattattgatttaatt
gctcccttgggcaaagggcaaaggggactaattgtatctccgcccaaggcgggaaaaacc
acactgttgaaaaggattgcaaacagcattaccgccaattcaccggatacagagttattg
gtgctgttgattgatgagcgcccggaagaggttacggatatgcagcgttcggtggctggc
gaggtagtcagttcgacctttgatgaaccgccggaaaatcatgttaaggtggcggacatg
gtgctggagcgcgctaagcgcctggttgagcacaagaaagatgtcatcatcctgatggac
agcattacccgtctggcacgggctcataacttagtggtgccccccagtgggcggacattg
tcaggcggggtggacccctctgcgctgcataagccaaaacggttttttggtgcggccagg
aatatcgaagaagggggcagcttgactatcttggctactgccctggtagagaccggcagc
cgcatggatgatgtcattttcgaggagtttaaaggcaccggtaatatggaacttatactt
gaccgccgcttggcggaaagaagggtgttcccggctatagatgttaaacgatcaggtacc
cgaaaggaagagctgctgttaaataaagaggaactggagctcacctggaagtttaggcat
actaccaataataaggcgcctcatgaagtgacggaaatgctgattgatgctctaaagaaa
accagcagaaatgccgaccttttacgggtgctgccccagctgtttccgtaa
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