Metallumcola ferriviriculae: MFMK1_001686
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Entry
MFMK1_001686 CDS
T10258
Symbol
addA
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
dbc Metallumcola ferriviriculae
Brite
KEGG Orthology (KO) [BR:
dbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbc03400
]
MFMK1_001686 (addA)
Enzymes [BR:
dbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MFMK1_001686 (addA)
DNA repair and recombination proteins [BR:
dbc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
MFMK1_001686 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
AAA_12
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
WRO21865
UniProt:
A0AAU0ULR5
LinkDB
All DBs
Position
1693555..1697268
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AA seq
1237 aa
AA seq
DB search
MQWNTSQKSAIESKNQNILVSAGAGSGKTAVLVERILRRVLDPADAMELDKILVVTFTEA
AAAEMRQRIGREIQKKLVAEPENTYYRQQFNLLGKASISTIHSFCLDSVRKYFYRLNLEP
NFRIADNSEIALLRQEVIDKLFQGAYMNEDTEFLMLVEAYGETKDSKLKDTVFSLFDYAR
SQPYHHRWLQQLMNQFPHDLAELDKGRWVNELKEEIAVKLEEAKWYYERAQALTEQPGGP
YQYADTFNYERVTVEEIISSLAASSWQQLWSRFQAFDFARLKAAKDVDEDLKEFAKEWRT
QAKGIIIKLKEKFFARMPEEHLEDLGIIYPLVKRLIELTTEFDTSFSAVKREKGVLDFAD
LEQFCFSLLVDEEGQPTDIAVEMQSRFEEVLVDEYQDVNVIQNAILESAARQCEGGYMFM
VGDVKQSIYRFRLAEPTLFMNKEARYVSGFHQEGRLISLNTNYRSRQQVINGVNYLFQQL
MDARVGDIDYDKGTSVDHFLQYGELYPDIAAEDNLPHATLGRDIELHVLQREVDFDAEEV
DDDFASLAALEKEALVMAQRIKQLVEGDEKNGAAKVWERGTQAYRNITYRDVVILLRSPR
SSANVISQVFQQFNIPVYADVTQGYFSAQEVETMLALLRIIDNPQQDIPLAAVLNSPIGG
FSAEEMAAVRCLDKDGAFYSAVAAASKEKNLGELGEKAAQFLKTLSRWRTLSRREPLSSL
IWTIYRETGFLEYCAGLPRGEQRQANLRALYDRARQFDRFVFQGLYRFLHYVQRLQDTSN
DLAPARALGENENVVRIMSIHKSKGLEFPVVFLGDLGKKFNRKGFTGDMLFHQEMGIGLN
VVDSTLRHRYPTLAQMAVKARLERENLAEEMRVLYVALTRAKEQLILVGSVNGLEKWQDK
LSALAQHRTKRLPTFFRVGAETCLDWLCGGIIRHRHGKVIQSAGDGAVSEGALDGHPSSW
KVRVWCTDDLVELEKPGRPAVETEIWHKIISGQPLELEAEDEELAAAINWYYPAAGLVNK
AAKLSVSELKRREMFQDDQDQPGTLMSRQLRKKPRFEAEQLLGAAEKGTALHLVMQHVDL
YQPVNDQSLKEQINRMISKELLTPELAKTIPVKKIVGFFRNAIGNKILANPSRVFREQQF
SLGIPAPEVYPDLADAGVAEKVLVQGVIDCFIKTGSGIILIDFKTDKVTTSMERLKEKYR
VQLKLYARALTAMYNLPVVGCYLFFFDTEELLEVQLI
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgcagtggaacaccagtcaaaaatcagccatcgaaagtaagaaccaaaatattttagta
tctgcaggtgccgggtcgggaaaaacggcggtgctagtggagcgaattttgcgccgagtt
ttagaccctgctgatgcgatggaactggataaaatcctggttgttacctttacggaagca
gctgcagcggaaatgcgtcaaaggattggcagggaaattcagaagaaattggtggcagaa
ccggaaaatacctattatcgacaacaatttaatctattgggcaaggcatctatttcaact
attcattccttctgcttggattcggtgcgaaaatatttttaccggcttaatttggagccg
aactttcgcatcgctgataatagcgaaatagctctattgcgccaggaagttattgacaaa
ttgtttcagggcgcctatatgaatgaagatactgaatttctgatgttggttgaagcctat
ggtgagacaaaggacagcaaattaaaagatactgttttttctttgtttgactatgcccga
agtcaaccgtatcaccaccgatggctgcagcagttgatgaatcaattccctcacgacctg
gccgaattagataagggtcgatgggtaaatgagctgaaggaagaaatcgctgtcaaatta
gaagaagccaaatggtactatgaacgggcccaggcgctgaccgaacaaccgggggggcct
tatcaatacgctgacacttttaattacgaacgggtaacggtggaggaaattatatcatca
ttggctgcttctagctggcagcagctttggtcgcgctttcaggcttttgatttcgctcgg
ttaaaggcggctaaagatgtggatgaggatttaaaagagttcgctaaagagtggcgcacc
caagcaaagggtattatcataaagctaaaggagaaattttttgccaggatgcctgaagag
caccttgaagaccttggcataatttatcctttagtaaaacggttgatagagttaactacg
gagtttgataccagcttttctgctgttaagcgggagaaaggtgtattggactttgccgac
ttggaacaattttgtttttccttactggtggatgaggaagggcagcctactgatatagct
gttgaaatgcaatcacgttttgaagaagtattggtagatgaatatcaggatgtcaatgta
attcagaacgccattttagagtcggcagcccgtcagtgtgagggtggttatatgtttatg
gtgggggatgttaaacaaagtatctatcgttttcgcttggcagaaccaacgttgtttatg
aataaggaagcccgctatgtttccggtttccaccaggaaggacgcttaatatccctaaat
actaattaccgcagccggcagcaggtaattaacggggttaattacctttttcagcagttg
atggatgcccgtgtaggcgacatcgattatgacaaggggactagtgtcgatcactttctc
caatacggtgaactatatcctgacatagccgctgaagataatttgccacacgcgacgctg
ggccgcgatatcgaacttcatgtactgcagcgggaggtggacttcgacgctgaagaggtt
gatgatgattttgcctccttggctgcattagaaaaagaagcattggtaatggctcagaga
attaaacaactggtggagggggatgagaagaacggggctgcaaaggtttgggagagaggt
acccaggcataccgcaatatcacctatagagatgttgttattttactccgttcgccgcga
agcagtgccaatgttatcagtcaagtgtttcaacaatttaatattccggtttacgcggat
gtaacacaaggatatttttctgctcaggaagtggagaccatgctggcgttattgcggata
atcgataatcctcagcaggatattcccctcgctgccgttttgaattcaccaataggaggg
ttttcagctgaggaaatggcggcagttcgttgtctggataaagatggtgcattttattca
gcagtagctgccgcttccaaagagaaaaatctgggtgagctaggggagaaggcagcacag
tttttaaagacattaagccgatggcgtactttatcccggcgggaacccttaagcagccta
atctggacaatttatcgggaaacgggttttttagaatactgtgccggcctgccccggggt
gaacagcgccaagccaatctccgggctctatatgaccgggcaaggcagtttgaccgcttt
gtattccagggtttgtatcgctttttacactatgttcaacgcctgcaggatacttcaaat
gacttagccccggcccgagcactgggcgaaaatgagaatgtagtacgcattatgagtatt
cataaaagtaagggtttggaattcccggtggttttccttggcgatctgggtaaaaagttc
aaccgtaagggctttaccggtgatatgctctttcaccaagaaatgggtatcggtcttaac
gtagttgacagtaccttgagacatcgttaccccacactggcgcaaatggcggttaaagct
cgcttagaacgagaaaacttagcggaagagatgcgggttttatatgtggctttaacccgg
gcgaaagagcagttgattctggtgggctcagtcaacggtctagaaaaatggcaggataag
ttgtctgctttggcccagcatagaacaaagcggctgccaactttttttcgagtgggagct
gaaacatgtcttgattggttatgcggcggcatcatccggcaccggcatggtaaagtaatc
caatctgcaggtgatggggcagttagtgaaggtgctttggatggacatccgtccagctgg
aaagtgagggtttggtgcacggatgatctggttgaactggaaaagcccgggcggcctgct
gtagaaactgaaatttggcataaaataatcagcgggcagcctctggagcttgaagcggaa
gatgaggaattagcagcagcgattaattggtattatcctgcagccggtttggtaaataaa
gcggcaaaattgtctgtcagcgaattaaaacgaagagagatgtttcaggatgaccaggac
caacctgggacacttatgtccagacagttgagaaaaaaacctcgttttgaagcggaacaa
ctgctcggtgccgccgaaaaagggactgcacttcatttggtaatgcagcatgtggattta
tatcaaccggtaaatgaccagtccttgaaagaacagataaaccgaatgatttcaaaggaa
ttactgacgccggagctggcgaaaacaataccggtgaaaaaaatcgtgggctttttccgc
aatgcaataggcaataaaatattggcaaatccatcccgagtgttccgggagcagcaattc
agtctggggattcctgcccccgaggtttacccggatttggctgacgcaggggtggcggaa
aaggttctggtgcagggcgtgattgattgttttattaaaaccggttccggtattatcttg
atagattttaaaacggataaggtgacgacatcgatggagcgcctaaaggagaaataccgc
gtgcagttgaaactttatgcccgggctttaacagcaatgtacaatttgccggtggtcgga
tgctatttatttttctttgacaccgaggaattgctggaagttcagttgatttag
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