Metallumcola ferriviriculae: MFMK1_003284
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Entry
MFMK1_003284 CDS
T10258
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dbc Metallumcola ferriviriculae
Brite
KEGG Orthology (KO) [BR:
dbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dbc03009
]
MFMK1_003284 (rlmD)
Enzymes [BR:
dbc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MFMK1_003284 (rlmD)
Ribosome biogenesis [BR:
dbc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MFMK1_003284 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_25
Methyltransf_15
Methyltransf_11
PrmA
UPF0020
N6_N4_Mtase
Methyltransf_12
TRM5-TYW2_MTfase
AviRa
PCMT
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
WRO23424
UniProt:
A0AAU0URK0
LinkDB
All DBs
Position
complement(3373069..3374358)
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AA seq
429 aa
AA seq
DB search
MADFPVRQGQTVQLNIEDLTSEGNGVGRYHGLAVFVGDALPGEEVIAQITEVKKKYSRAK
LLEVLTASEQRIAPRCNHFEYCGGCTLQHFQYPQQLAWKQSVVENALSRIGKIETEVLPV
LGMQQPWQYRNKVQFQVGLVDGNKRLGLYAPGSHQLVPVETCHLLPEEFSGLVKNFNLLL
DKGIPMKQVWLRKSFANGEIMAVVFTNGEPFTEAEALLKHHDPLVTVAVINDSNAKMSVV
GKPRLKEQIGKYDFVLSPRAFFQVNTVQAEVLYETARNWANLTGQETLWDLYCGTGTVGI
FMSEKCRRLVGIELNKAAVQDAKLNARLNGVKNASFRHGKAEERLKDLWQADDANVVILD
PPRQGCDQRLLHQLLELGPEKIIYISCNPATLARDLKTLSDAYQIKKVQPVDMFPQTGHV
ECVVLIEKK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttcctgttagacagggtcaaacagtacaattaaacattgaggaccttact
tcagaaggtaacggcgtcggtcggtatcatggactggcggtttttgtcggtgatgcactg
ccaggcgaagaagttattgcgcaaataacagaggtgaaaaagaaatacagtcgggcaaag
ctgttggaagtactaaccgcttcagagcagcgtatcgctccacgctgtaaccattttgaa
tattgcggcggctgcaccttgcagcattttcagtatcctcagcagttagcctggaagcaa
tcggtggttgaaaatgcactaagccgcattggtaaaatagagactgaggtcttgccggtg
ctgggtatgcaacaaccatggcagtatcggaataaggtacagtttcaggtcggcttggta
gacggcaataagagactgggcctatacgccccgggcagccatcaattggtgcccgtggag
acatgccaccttttgccggaagaattttccgggctggtgaagaattttaatctattgttg
gataaaggtattcccatgaaacaggtatggctcagaaagagttttgctaacggcgaaata
atggcagtggtgtttactaatggggaaccctttaccgaagcagaagctttacttaagcat
catgatccattagtaactgtcgcggtcattaatgatagcaacgctaaaatgtccgtagtg
ggtaagccgaggttaaaagaacagattggcaaatatgattttgttctctcgccccgggcc
ttttttcaggtaaacactgtccaggccgaggtgctttatgaaactgcccgaaactgggcc
aatcttacggggcaagagaccctctgggatttatactgtggtaccggaaccgtcggcatc
tttatgtcagaaaagtgccgtagactggtgggtatcgaactgaacaaggcagcggtgcag
gacgccaaactaaatgcccgcttaaacggtgttaaaaatgccagcttccgccacggtaaa
gcggaagaaagattaaaggatctttggcaggccgatgacgccaacgtggttatcctagac
ccgccccgtcagggctgtgaccaaagactgctgcaccagctactagaactgggaccagaa
aaaattatctacatatcctgtaacccagcaaccctggcccgtgacttgaagacactatcc
gatgcatatcagataaaaaaggtccagccggtggatatgtttccgcagacggggcacgtg
gagtgcgtcgtgttgatagagaagaaatag
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