Metallumcola ferriviriculae: MFMK1_003302
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Entry
MFMK1_003302 CDS
T10258
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dbc Metallumcola ferriviriculae
Pathway
dbc03420
Nucleotide excision repair
dbc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MFMK1_003302 (pcrA)
03430 Mismatch repair
MFMK1_003302 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbc03400
]
MFMK1_003302 (pcrA)
Enzymes [BR:
dbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MFMK1_003302 (pcrA)
DNA repair and recombination proteins [BR:
dbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MFMK1_003302 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
MFMK1_003302 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
ResIII
DEAD
DUF3553
GcnA_N
Motif
Other DBs
NCBI-ProteinID:
WRO23442
UniProt:
A0AAU0USB6
LinkDB
All DBs
Position
complement(3395628..3397778)
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AA seq
716 aa
AA seq
DB search
MSRLLEHLNTEQKEAVTSVSGPLLIIAGAGSGKTRVITHRIAYLLDEMDVDPGRILAITF
TNKAANEMKERLEKLLSYPVSGMWVSTFHSACVRILRRETDHLPYGRNFVIYDAADQRTL
LGSCVKELGLDEKRYTPRVIAAKISNAKNQLYTPEKFRQKADDFFDEQVAKVYTLYQEKL
FKYNAMDFDDLIMQTVLMFSRKPEVLAYYQNRFQYILVDEYQDTNHAQYILVKLLAQQHE
NICVVGDPDQSIYGWRGADIQNILDFEHDYSSAKVIRLEQNYRSTRNILGAANEVIKQNM
GRKPKNLWTENEEGRKIIKYQGEDERAEARFVAEEIFRLHQEGFKLGDCAILYRVHAQSR
ALEDWLLKGNIPYEVLGGVRFYDRKEIKNILAYLRVLANPADDISLARAINEPRRGVGQA
TWEKLAAAAANQNQSVAQLILTDIKTVDLGGRAQNAVNGFAVLLKKLMDAKVKLPVTQLV
ETILQESGYWEQMEQDKTPEGQTRRENIREFITVTQEYDRNSEEKDLEGFLAEVSLVSDI
DNYEGEDKVPMMTLHTAKGLEFPVVFLVGLEDGVFPSNRSLLEAEQMEEERRICYVGMTR
AQQQLYLTYAWRRHMYGNTQYNSPSRFLNEIPHQFFGGDAAPKIAAANNNVTQSEADSEG
RQIFNLGDKVYHVKFGEGSVVKVVGSGSDVKVTVAFPDQGIKVLALAYAPLRKVSK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
ttgagccgtttattagagcatttaaacactgaacaaaaagaagcggtaacctcagtatca
ggtccgcttttgataattgccggtgctggttcgggtaagactcgggttatcacgcaccgt
attgcgtatttattagacgaaatggatgtagaccccgggaggatattggcaatcaccttt
accaataaggcggcaaatgagatgaaagagcgtttggaaaaactgctctcttatccggtg
tccggtatgtgggtcagtaccttccattcggcttgcgtgcgtattttacgccgggaaacg
gaccacctgccttatggccgaaactttgtcatctatgatgctgcggatcagcggacatta
cttggaagctgtgtcaaggaactggggctggatgaaaaacgttatactcctcgagtaata
gcggctaaaatatctaatgccaaaaaccagctatatactccggagaagtttaggcagaag
gctgatgacttttttgatgagcaggtggccaaggtttatactttataccaggaaaagtta
tttaagtataatgccatggattttgatgatttaattatgcagactgtactgatgtttagc
cgtaagccggaagtacttgcatattatcaaaatcggtttcaatacattttagtagatgag
tatcaggatacaaaccatgcccagtacatactggttaaactcctggctcagcaacacgaa
aatatctgtgttgtgggagacccggaccagtcaatctacggctggcggggtgcggatatc
cagaatatccttgattttgaacatgattatagcagtgcaaaggtaattcgtttggaacaa
aactatcggtccacccgcaatattctcggggctgcgaacgaagttattaagcaaaatatg
ggccggaagcctaagaatctttggacagaaaatgaagagggccggaaaatcatcaagtac
cagggtgaggacgagcgggctgaagcacggtttgtggcggaagaaatttttcgtctacac
caagagggttttaaattgggggattgtgccatcctctatcgggtacacgcgcagtcgagg
gctttagaagattggctccttaagggtaatattccttacgaggtactggggggggtgcga
ttttatgatcgcaaagagataaaaaatattttagcttacctgcgggtgctggctaacccg
gcggatgatatcagcctggcccgggcaatcaatgaaccacggcgaggtgttgggcaggct
acttgggaaaagttagctgcagctgcagctaaccagaatcagtctgtggcccagttgata
ttgacggacattaaaactgttgatctgggggggcgagcccaaaacgccgtaaatggtttt
gccgttttgctaaagaagctgatggatgccaaggtgaagcttcccgttacccaactagta
gaaacgatacttcaggaaagcggctattgggaacagatggaacaggacaagacccctgaa
gggcagacccggcgggagaacatccgtgaatttatcactgttacccaggaatatgaccgt
aacagcgaagaaaaagacttggaaggatttttagcggaggtttctttggtgagcgatata
gataattatgagggcgaggataaggtgcccatgatgactttacacactgccaagggtttg
gagtttccggtggtatttttagttgggctggaagatggagtgtttcccagtaatcggtcg
ctgcttgaagcggagcagatggaagaagaaagacgcatttgctatgtgggtatgacccgg
gcccagcagcagctttacctaacctacgcctggagacgccatatgtatggcaatacccaa
tataacagcccatcgcggtttctaaatgaaataccacatcagtttttcggtggcgatgca
gctccaaagattgcggcggcaaataataatgtgacacaaagtgaagctgacagtgagggc
cgacagatattcaacctgggtgataaagtttaccacgtcaagtttggtgagggttcggtg
gtaaaggtggtaggcagcggcagtgatgtcaaggttacggttgcttttcctgaccagggc
attaaagtactggctctggcctatgcaccgctacgtaaggtcagtaagtga
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