Desulfomarina profundi: DGMP_00220
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Entry
DGMP_00220 CDS
T07650
Symbol
yhaM
Name
(GenBank) HD family phosphohydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
dbk
Desulfomarina profundi
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dbk03019
]
DGMP_00220 (yhaM)
Messenger RNA biogenesis [BR:
dbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DGMP_00220 (yhaM)
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Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
HDOD
TraI_2
Cas3_HD
HD_3
Motif
Other DBs
NCBI-ProteinID:
BCL59329
UniProt:
A0A8D5JFW7
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Position
19924..20964
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AA seq
346 aa
AA seq
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MKKKIFIEQLKQGDRIDDLFLVKSARLAETKAGKPYLILAVMDRSGEVSGPVWENALEMQ
KICQPGIIIKISGVIQSYRDALQLKVERVQSVPRGEVDLGEFLPVSPRNRKEMADELSSL
IRTISNPYLKKLLGRFFGREDDLLIFRDAPAAKGIHHAYIGGLLEHSLSMARLCHLLADH
YDGVNRSLLLTGALLHDIGKLKELQANDGVVEYTVPGRLKGHLVIGCELVGRTAERIKNF
PGDLLVQLQHLILSHHGRQEFGSPVVPMTVEAMILSFVDDLDAKMNLIEQLRRKMNSEDM
EWTEYQRTLERYLYLGGFKEKTEQTDTKKKDVNRRQPSLFPGPEPD
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaagatatttattgagcagctgaaacagggagatcggattgatgatctcttc
cttgtcaagtcggcacgcctcgcagagacgaaggcggggaagccgtatctcatcctggct
gtaatggacagaagtggtgaggtcagtggtcctgtgtgggaaaatgctcttgaaatgcag
aaaatatgccagcccggaattataataaaaatttccggtgtgatacagtcgtaccgggat
gcacttcagctgaaagttgagcgggttcagtctgtaccccgtggggaagtggatctaggg
gaattcctcccggtttcacccaggaacaggaaggaaatggcggatgagctgtcttcactt
atcaggaccatcagtaacccgtaccttaaaaaacttctgggtcgctttttcggcagggaa
gatgatctgctgatttttcgtgatgcccccgcagcaaaaggaattcaccatgcctatatc
ggtggcctgctcgaacactctctttccatggccagactctgtcatctcctggcggatcat
tacgatggtgtgaaccgttcccttctccttaccggagctctgctccatgatatcggcaaa
ttgaaggaacttcaggcaaatgatggtgtggtggagtatactgtgccaggcaggctgaag
gggcatcttgttatcggttgcgaactggtgggaagaacggcagaacgcataaagaatttt
ccgggagacctgcttgtacagttgcagcatctgattctcagccaccatggtcggcaggaa
ttcggttctcctgttgtgccgatgactgttgaggctatgatactcagttttgttgatgat
cttgacgcgaagatgaacctgatagaacagttgcgtcggaagatgaacagcgaagatatg
gaatggactgaatatcagagaactctcgagaggtatctctaccttggaggtttcaaggaa
aaaactgagcagacagacacgaagaaaaaggatgtcaatcgtcgtcaaccgtctcttttt
cctggaccggaaccagattga
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