KEGG   Desulfomarina profundi: DGMP_00980
Entry
DGMP_00980        CDS       T07650                                 
Symbol
hup-2
Name
(GenBank) DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
dbk  Desulfomarina profundi
Brite
KEGG Orthology (KO) [BR:dbk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dbk03032]
    DGMP_00980 (hup-2)
   03036 Chromosome and associated proteins [BR:dbk03036]
    DGMP_00980 (hup-2)
   03400 DNA repair and recombination proteins [BR:dbk03400]
    DGMP_00980 (hup-2)
DNA replication proteins [BR:dbk03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    DGMP_00980 (hup-2)
Chromosome and associated proteins [BR:dbk03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    DGMP_00980 (hup-2)
DNA repair and recombination proteins [BR:dbk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      DGMP_00980 (hup-2)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 SctB2 DUF2267 DUF937
Other DBs
NCBI-ProteinID: BCL59405
UniProt: A0A8D5JMU3
LinkDB
Position
110633..110905
AA seq 90 aa
MNKKELVEKIAAKRGISKASAARALDAVLATMTGVMEKGERVTITGFGSFRVIERVEKRG
RNPQTGQGIIIPARKVVKFKPGKNLFERIQ
NT seq 273 nt   +upstreamnt  +downstreamnt
atgaataaaaaagaactggtggaaaaaatagcggcaaaaagaggtataagcaaggcaagt
gccgccagggcgctggatgcggttctggctacaatgactggtgtaatggagaagggggag
cgggttacaataaccggattcggttctttcagagtaatagaacgggttgaaaaaagagga
cgaaatccccagacggggcagggcatcattatccctgcccggaaagtggtgaaattcaaa
ccgggtaaaaatctgtttgaacggattcaataa

DBGET integrated database retrieval system