Desulfomarina profundi: DGMP_04610
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Entry
DGMP_04610 CDS
T07650
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DGMP_04610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dbk03021
]
DGMP_04610 (rpoB)
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_04610 (rpoB)
Enzymes [BR:
dbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DGMP_04610 (rpoB)
Transcription machinery [BR:
dbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DGMP_04610 (rpoB)
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DGMP_04610 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BCL59768
UniProt:
A0A8D5FJ25
LinkDB
All DBs
Position
523071..527150
Genome browser
AA seq
1359 aa
AA seq
DB search
MERIRKNFATAETVIEPPHLISMQRLSYEKFLQIDKDPDERDDFGLQAILKNVFPINDFN
GLCSLEFVRYKFGEPKYTVQECQQRGMTYEIPLKIVVRLITFDVDEETGVQSIRDIKEQE
VFLGSLPLMTGDGVFVINGTERVIVSQLQRSPGLFYTHDNGKSHSSGKLLYSARIIPVRG
SWIDLEFDIKDVLHVRIDRRRKFPVTTLLKAIGFSDEELLGEFYPLSTVRKTEDGYEKSF
DSELFKGKRLEFDLINPADGEILGRKGKKISMVLCKKIMAAGIEYLPVSKEALLGSVLAN
TIMKEDGDEPLFLCNTEITEPMLETLEEAGINEFKVLHIDGVNYSESFSKTLALDKAKNT
EEALLEIYRRLRPSSPPTLEVAEAFFENLFFNQDLYDLSEVGRYKINAKLGLDIDINNRA
LTRVDIIHAVRHLVRLKDTQGGVDDIDHLGNRRVRTVGELVENQYRMGLVRMERAIKERM
TLQDVETLMPHDLVNPKPISAAIKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLS
RERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLATYARVNPYGFIESPYRKVKDRIV
LDEVKYLSALQEQNHIIAPALTPYDENKRIIPDILITREEGEVLTSSVDNVTYMDIAPNQ
MISVAASLVPFLENDDANRALMGSNMQRQAVPLLKTAAPFVGTGMEKYVARDSGACLMSA
GDGVVEEADSNRIVVRYEEPGTDGYDTGVAVYRLQKYKKSNQNTCFNQIPLVLPGTRVKK
GTVLADGPSCEQGEIAIGKNVTIAFMPWRGFNFEDSILVNERLLKEDTYTSVHIEVFETM
ARDTKLGKEEITRDIPNVSEETLRNLDESGIVQIGAELKPGDTLVGKVTPKGETVLSPEE
KLLRAIFGEKAQDVKDSSLRVPPGVSGVVIDAKVFSRKGVDKDERSLMIEDLEIEKLNQD
KLDELRSLKRGVCREIGDIIDGRTAKKDIRDARGEVVVALGKKITKEHADRIGFDLLRDI
DFSEKAKYEDAFDAVYERYNSQARLITQRYDGIIERMKKGDDLPPGVVKMVKVYVATKRK
LSVGDKMAGRHGNKGVVSRLLPEEDMPFFADGRTVDIVLNPLGVPSRMNVGQVLEVHLGF
AAKKLGEQLEEFANRFAVDEIKKKLRAVFSDEEFEAITDGKSDTELIEWARRHKDGIHMA
TPVFDSAPESEIRRLLVEAGVDEVGQSQLYDGLTGEPFANKVTVGVMYMLKLHHLVDNKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYTLKEFLTTKSDDVEGRTT
MYERIVKGNNFLTTGLPESFNVLVKELQALCLNMELIEE
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaatcagaaagaactttgccacggctgaaactgttatagagccgccacacctc
atctccatgcagcgtctttcgtacgaaaagtttctgcagatagataaagatcccgacgaa
agggatgattttggactgcaggcgattttaaaaaatgtatttccgattaacgattttaac
ggactctgttctctcgaatttgtacggtataagttcggagagcccaagtacactgtccag
gaatgccagcagaggggaatgacatatgagattcctctgaagatagtagtccgattgatt
acctttgatgtagacgaagaaacaggcgtccagtcaattcgggatatcaaggaacaggag
gtttttcttgggtccctgcctcttatgacaggagatggcgtctttgttattaatggaact
gaaagggttattgtttctcagctccagcgttctcccgggcttttttatacccacgataac
gggaaaagccattccagtgggaaattgctctactcggcccgcatcattccggtacgtggc
tcctggattgatcttgaatttgatattaaggatgtccttcatgtgaggatagacaggaga
aggaagtttccggtcacaactcttctgaaggctattggcttttcagatgaggagttgttg
ggggaattttatcccctgagcactgttcgcaagactgaagatggatatgagaaatctttt
gactctgaactttttaagggcaagaggctcgagtttgatctcattaatcctgccgatggt
gaaattcttggccggaagggaaagaaaatctccatggtgctctgtaaaaaaattatggct
gcaggaattgaatacctgcctgtatcaaaagaggctcttctcggtagtgtgcttgctaat
accatcatgaaggaagatggagatgaaccactctttctctgtaacaccgaaattactgaa
ccgatgcttgaaactcttgaagaagccgggatcaatgagtttaaagtgctgcatattgac
ggggtaaattattcggaatccttcagtaaaaccctggccctcgataaggcgaaaaatacc
gaagaggcactgcttgagatttacaggagactgcgtccttcaagtcctccgacacttgaa
gttgctgaggccttctttgaaaatctctttttcaaccaggatctttatgatctctccgag
gttggtcgttataaaataaacgctaaactcgggcttgatattgatatcaacaacagggcc
ctgaccagagtagacatcatccacgcggttcgtcatctcgtcaggttgaaagatacccag
ggtggagtggatgatatagaccatcttggaaacagaagagttagaactgtcggggagctt
gttgaaaatcaatacaggatgggattggtacgaatggagcgggcaatcaaggagagaatg
actcttcaggacgtggaaacactgatgccccatgaccttgtcaatccaaaaccgatatcc
gctgctatcaaggagtttttcggtaccagccagctttcacagttcatggatcagacaaac
cctctttctgaggttacacacaagaggcgtttgagtgcactcggacccggcggactttcc
agggagagagcaggctttgaagttcgtgacgttcacccgactcattatggccggatatgt
ccagttgaaacgcctgaaggtcccaatatcgggctgatcgtttcactggcgacatatgcc
cgggttaatccatatggattcattgaatctccctatcgaaaagtcaaggatcgcattgtc
cttgatgaagttaaatatctcagcgctctgcaggagcagaaccatatcattgctccggcg
ctcacaccttacgatgagaataaacgtattattccggatattttaattacccgggaagaa
ggcgaggttcttacctcatcggttgacaacgtcacatatatggatatcgcaccgaatcag
atgatcagtgttgccgcttcccttgtgccgtttctggaaaatgacgatgccaaccgggcc
ctgatgggttccaatatgcagcgtcaggccgtaccacttctgaaaacggctgcgccattt
gttggaaccgggatggagaaatatgtagcccgggattccggggcatgccttatgagtgcc
ggagatggtgttgtggaagaagctgattccaacaggattgtggtcaggtatgaagagccg
ggcacagatggatatgataccggggttgcagtttacaggttacagaaatataagaagtca
aatcagaatacctgttttaatcagatccctcttgttctacccggaacccgtgtgaaaaag
ggtacagtacttgccgatggtccatcctgtgagcagggtgagatagccattggtaaaaat
gttactatagcttttatgccatggcgtggtttcaattttgaggattctattctggttaat
gaacgtcttttaaaagaagatacatacacctctgttcatatcgaggttttcgagacaatg
gccagggacacaaaactgggtaaggaggagatcacccgggatatccctaatgtcagcgag
gaaactctccgaaatcttgatgaatcgggtattgttcagataggggctgagttgaaaccg
ggtgacactctggttggtaaggtcacgcccaaaggtgagaccgtactttcacctgaagaa
aaattgctgcgagcaatttttggggaaaaagcccaggatgtcaaggattcttcccttcgt
gtaccacctggggtgagtggagttgtcatcgatgccaaggttttttccagaaaaggagtg
gataaagatgaacgctccctgatgattgaagatcttgagatagaaaagctcaaccaggat
aaactcgacgaattacgcagcctgaaacggggcgtctgtcgcgaaatcggtgatatcatc
gatggaagaacggccaaaaaggatattcgtgatgctcgtggtgaagtggttgtcgctctt
ggcaagaagatcactaaagaacatgctgacagaataggctttgatcttttgcgtgatatc
gatttttccgagaaggcaaagtatgaggatgcctttgatgctgtctatgaacgatataac
agtcaggcacgattgatcacccagcggtatgacggtatcattgagcgtatgaagaaaggt
gatgaccttcctccgggtgtggtgaaaatggtgaaagtttatgtcgccacaaaacgaaaa
ctctcggtcggtgacaagatggcaggccgtcatgggaacaaaggtgttgtttcacgcctg
ttgcctgaagaggatatgccgttttttgcagatgggaggaccgttgatatcgtactcaat
cccctgggtgttccctccaggatgaacgttgggcaggttcttgaggttcacttgggtttt
gcagcaaaaaaacttggagaacagctggaagagtttgccaaccgttttgctgtggatgag
atcaagaaaaaactgcgtgcggttttttccgatgaagagttcgaggctataaccgatggt
aaaagtgatacggaactgatcgaatgggcaagacgtcacaaggatggtatccatatggct
actcctgtctttgacagtgccccggaatcggaaatccgccgccttcttgttgaagcaggt
gtggatgaggttggtcagagtcagctctatgacggtcttaccggtgaaccgtttgcgaac
aaggtaacggttggggtcatgtatatgctgaaactccatcaccttgttgataacaagatt
cacgcaaggtccaccggaccctattcgttggtcacgcagcagccactcggcggtaaagct
cagttcggtggtcagcgtctcggagagatggaggtttgggccatggaggcgtatggtgcc
gcatatactcttaaagaattcctgacaaccaaatcagatgatgtagaaggcaggacgaca
atgtatgagcgaatagtcaagggaaataattttcttacaaccgggctgccggagtcgttt
aatgttctggtgaaggagcttcaggccctctgtctgaatatggaacttatcgaagaataa
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