Desulfomarina profundi: DGMP_04620
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Entry
DGMP_04620 CDS
T07650
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DGMP_04620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dbk03021
]
DGMP_04620 (rpoC)
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_04620 (rpoC)
Enzymes [BR:
dbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DGMP_04620 (rpoC)
Transcription machinery [BR:
dbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DGMP_04620 (rpoC)
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DGMP_04620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BCL59769
UniProt:
A0A8D5FQ63
LinkDB
All DBs
Position
527276..531325
Genome browser
AA seq
1349 aa
AA seq
DB search
MEELFNFFQKPKAPVKFKNVKISLASPEKIMDWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDFECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHIKLAAPVAHIWFLKSL
PSKIGAVLDMTLKQLEKILYFEQYAVVESEADSLPPGTLLTEEKYRQALSEYPGQFKVGI
GAEAIRKLLASKDLVQLSHQLREEMANTNSKTKRQKLGKRLFVIEAFRDSGNQPEWMILE
VIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIIRNEKRMLQ
EAVDVLFDNGRRGRVITGGNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPH
LRLHQCGIPKKMALELFKPFIYHKLERKGYVTTIKSGRKMVEKGVKEVWDVLDEVVTEYP
VILNRAPTLHRLGMQAFEAVLIEGKAIQLHPLVCMAFNADFDGDQMAVHVPLSVEAQVEA
RVLMMSTNNILSPANGEPVIIPSQDIVLGLYYMTRERMNVKGEGKAFSSDEEAIIAFDYD
QVHLQAKIKVRKDGELVETTMGRIILGQLLPDSVKFAEVNKVMTKKALAALIDHTYRNAG
TKDTVILADRLKDIGYEYATRAGISICINDMKIPLAKEEFVENAERDVLDVEQQYTDGLI
TSGEKYNKVVDIWSKVTEEVANAMMDEIKVDYFRDKDGNVVEAPSFNSIFIMADSGARGS
RDQIRQLAGMRGLMAKPSGAIIETPIKANFREGLGVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQESTIVEKDCMTLDGMIAEPLMDGGEIIVPLSGRILGRVALEDIVDPFN
DTLIVKAGEEITEEKVEQIMETGIDKVPIRSVLSCRAKRGVCAACYGRDLGRGHMVNIGE
AVGVIAAQSIGEPGTQLTMRTFHVGGTASRSVEQAELQTHIGGTVEFYNLHSVENSEGTH
IVMNRNAEILIKDELGRERERFKVNYGAQLLVKEGETVERDTILADWDAYTIPIVAEVGG
VIKFGDILEGVTMQEKVDGVTGRASMVIVHSTGSTQLNPRISIKNEKGKTVKLPGSEAFA
RYSLPVGSIISVNEGDVIQPGTIVGKIPRETTKTKDITGGLPRVAELFEVRKPKDPAIIT
KIDGKVSFGKELKGKRRVVVTPEYGEPQEYLVPKSKHIIVHEGDYVQAGEPLMEGTIVPN
DILSVLGVKELSKFLVNEIQEVYRLQGVKINDKHIEVIVRQMLKRVMITSVGDSKFMIGE
QVEWWKFEEERDRLIAEGKKPGAAEPLLLGVTKASLSTESFISAASFQETTKVLTNAAMA
GKVDELKGLKENVIMGRLISAGTGLGGDQ
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagttattcaatttttttcaaaaaccgaaagccccagtaaaatttaaaaacgtc
aaaatatctcttgcttcccctgagaaaatcatggactggtcccatggtgaggtcaagaaa
ccagagactattaattacaggacgttcaagcctgaacgggatggtttgttctgcgccaag
atttttggcccggttaaggattttgaatgcaattgtggtaaatataaacgcatgaagcac
agaggagttgtctgtgaaaaatgcggagttgaagttattcagtcaaaagtcagacgtgag
cggttgggtcatataaaacttgcagcgcctgttgcacatatctggtttttaaagagtctg
cccagtaaaatcggggcggttctcgatatgactctcaaacaactggaaaaaatcctctat
tttgagcagtatgctgttgttgagtccgaggctgacagtctgcctccgggaacactgttg
actgaggaaaaatacagacaggccctgtctgaatatccaggccagttcaaggttggaatc
ggtgccgaggctatcaggaaactgcttgcttcaaaagatctcgtgcagttgtctcatcag
ctgcgtgaggaaatggccaacaccaattccaaaaccaagaggcagaaacttgggaaaaga
ctgtttgtcattgaggcattcagggattcaggtaatcagcctgagtggatgattcttgag
gttattcccgtacttccacctgatcttcgtcctctcgtgccgctggaaggcggtcgattc
gccacatcagatctcaatgatctgtatcgaagggtgatcaaccgaaacaacaggttgaag
cgcctgcttgagctggacgctcctgatattattattcgtaatgaaaagagaatgctgcag
gaggctgttgatgttctgtttgataatggtcgtcggggtcgtgtcataacaggcgggaac
aagcgtcccctgaaatccctgtccgatatgctgaagggcaagcaggggcggttcagacag
aatctgctcggtaaacgtgttgattactccgggcgttcggtcattgtggtgggaccacac
ctgcgtcttcatcaatgcggaattcccaagaagatggctctggagcttttcaaacccttt
atttaccataagcttgaaagaaaaggctatgtgacaaccatcaagagtggtcgtaagatg
gttgaaaaaggggtgaaagaggtatgggatgttcttgatgaggtcgtcaccgaatatcct
gttattctcaaccgtgcaccgaccctgcacagactcggtatgcaggcttttgaagcagtt
cttatcgaaggaaaggctattcagctgcatcccctggtatgtatggcatttaatgctgac
tttgatggtgatcagatggctgttcatgtgccgttgtccgtggaggcacaggtcgaagcc
agggtgctgatgatgtccaccaataatatcctctcacctgccaatggcgagccggtaatt
atcccttcacaggatattgttctcggattgtactatatgacccgtgaacggatgaatgta
aagggtgaaggcaaggcattttcttctgatgaagaggcgataattgcctttgactacgat
caggttcatctccaggcgaaaatcaaggtccggaaggacggtgagctggtggaaacaacc
atgggccgcattattctcggtcaacttttacccgattccgtcaaatttgccgaggtcaac
aaggtcatgaccaagaaggcactggccgcacttattgatcatacatacaggaatgccgga
accaaggatactgtcattcttgctgaccgtctgaaagatattggttacgagtatgccacc
agggccgggatttccatctgtatcaacgatatgaagattcctcttgccaaggaggaattt
gttgaaaatgctgaaagggatgtgcttgatgtagaacagcaatataccgatggtctcatc
acttcaggggaaaaatataacaaggttgttgatatttggtcaaaagttacagaggaagtg
gccaacgccatgatggacgagatcaaggttgactatttccgtgataaggatggtaacgtg
gttgaggctccgagcttcaattccatttttatcatggctgattccggagctcgtggatca
agagaccagatccgtcagcttgccggtatgcgcgggcttatggcaaaaccttccggggct
attattgagaccccgattaaagcgaatttccgggaggggcttggggttcttgaatatttt
atttccacccatggtgccaggaaaggacttgccgatactgccctgaaaactgcaaactcc
gggtatctgaccagaagactggtggatgtggcccaggaatccaccatcgttgagaaggac
tgcatgactctggacggtatgattgcggaaccactgatggatggtggtgaaatcattgtt
cctctgagtggcaggattctcggcagggttgctttggaggatatcgttgatccctttaat
gatacgcttatcgtcaaggccggtgaagaaattacagaagagaaggtcgaacagatcatg
gagacaggtattgacaaggtccccattcgttcggtattgagctgtcgtgccaagcgtggt
gtctgtgccgcctgttatggcagggatcttggtcggggtcacatggtgaatatcggtgag
gctgtcggtgtcatagctgctcagtccatcggggagccgggaacccagttgaccatgcgg
acctttcatgtcggtggtactgccagccgttcagtagagcaggcagaacttcagactcat
atcggtggtacagtggagttttataatctgcactcagttgaaaactccgaagggacgcat
atcgtcatgaaccgtaacgctgaaatccttattaaggatgaacttggcagggagcgggaa
cgtttcaaggtgaattatggtgcccagctactggttaaagagggagagacagtagaaagg
gacacaatccttgcagactgggatgcctatacaatcccaattgtcgccgaagtgggtggt
gtcattaaatttggtgatattttagaaggcgtgaccatgcaggaaaaggttgatggagtc
accggaagggcttccatggtgattgtccattccaccggttccactcaactgaatccgagg
atctcaatcaaaaatgagaagggaaaaactgtcaaactgccgggatctgaagcttttgcc
cgttacagtctgccggtcgggtctatcatttcagtgaatgaaggtgatgtcattcagccg
ggtactattgttggtaaaattccaagggagacaacaaaaaccaaggatattaccggtggt
ctgcccagggttgccgaactgtttgaggtgagaaagcccaaggatccagcaataataacc
aaaattgacggaaaggtcagcttcggtaaggaactgaaaggaaagagacgggttgttgtt
actcctgaatatggagaacctcaagagtacctggttcccaagtcaaaacatatcattgtt
catgagggtgattatgtacaggctggagagccattgatggaaggaactattgttccaaat
gatattctttctgttctcggggtaaaggagctttccaaatttcttgttaacgagattcag
gaagtgtatagactgcagggtgtcaagatcaatgataagcatatcgaggtcattgttcgt
cagatgctcaaacgggttatgattacttcagtcggagattccaaattcatgattggagag
caggtcgagtggtggaagtttgaggaagaacgggacaggttgatagctgaagggaagaaa
ccgggggcggctgaaccattgcttctgggggtcacaaaggcatccctgtcaacggagagt
tttatttctgcggcgtccttccaggaaactacaaaggtccttaccaatgcagcaatggcc
ggaaaggttgatgaactgaaaggtttgaaggaaaatgtgattatgggaaggcttatttcc
gcaggaaccggcctggggggtgaccaataa
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integrated database retrieval system
