Desulfomarina profundi: DGMP_04940
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Entry
DGMP_04940 CDS
T07650
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DGMP_04940 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dbk03021
]
DGMP_04940 (rpoA)
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_04940 (rpoA)
Enzymes [BR:
dbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DGMP_04940 (rpoA)
Transcription machinery [BR:
dbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DGMP_04940 (rpoA)
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DGMP_04940 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
BCL59801
UniProt:
A0A8D5FQZ5
LinkDB
All DBs
Position
549503..550546
Genome browser
AA seq
347 aa
AA seq
DB search
MTQAADEKTPFYRNWHELIKPEKLEVDRDKHTDTYGKFVCQPLERGFATTIGNSLRRILL
SSIQGAAITTVKIEGALHEFTSMKDIMEDVSEIILNLKTIRIKLLSGDSQRVIIDKTGPG
KVTAADIDGNELVEVMNPEQVICTLTGDVTFRAELTVEWGKGYQPAEQQDKEKLAIGQIP
VDAIFTPIKKIQYVTSQARVGQQTDYDKLTIEIETDGSLRPESALAYAAKILKEQMTIFI
NFDEEEAEPEVTEDTSREVEPDNPYLDKPVEDLELSVRSANCLKNADIHFIGDLAQKTDQ
EMLKTKNFGRKSLNEIKALLAEMDLTLGMKFENWTPPDVKETDDQQI
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgactcaagctgccgacgaaaaaacaccattttaccgtaactggcacgagcttattaaa
ccagagaagcttgaggttgacagggacaaacatacggatacgtatggaaagtttgtctgt
cagccccttgaaaggggatttgcgactactatcgggaattcgctgcggcgaatccttctc
tcttcaattcagggagcagcaattaccacggtaaagattgagggggctcttcacgaattc
acttccatgaaggatataatggaagatgtcagtgaaattatcctgaatctcaaaacaatc
aggatcaaactgctctccggcgattcccagagggtcattattgacaaaaccggacctgga
aaagttacagctgcagatattgatggtaatgagctggttgaggtgatgaatcccgaacag
gtgatctgtactcttaccggggacgttactttcagagctgaactgacagtagaatggggc
aagggatatcaacctgcagagcagcaggataaagaaaaacttgctattggccagatccct
gtggatgcaatttttacccccatcaagaaaatacagtatgtaacctcccaggccagagtt
ggtcaacaaactgattatgacaagttgactattgaaattgaaaccgacgggagtctcagg
cccgaaagcgctcttgcatatgctgcaaagatcttgaaagagcagatgactattttcatc
aattttgatgaggaagaagctgagcccgaggttactgaggataccagcagagaggtcgaa
cctgataatccttatctggataaaccggtagaagatcttgagttgtctgtgcgttcggct
aactgtctgaaaaatgctgatattcattttattggagatctcgctcagaagaccgatcag
gagatgttaaaaaccaagaattttggtcgaaagtccctgaatgagataaaagccctgctc
gccgaaatggatcttaccctcggcatgaagtttgaaaactggactccacctgatgttaaa
gaaaccgatgaccagcaaatatga
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