Desulfomarina profundi: DGMP_09380
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Entry
DGMP_09380 CDS
T07650
Name
(GenBank) hypothetical protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03030
DNA replication
dbk03430
Mismatch repair
dbk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DGMP_09380
03430 Mismatch repair
DGMP_09380
03440 Homologous recombination
DGMP_09380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dbk03032
]
DGMP_09380
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_09380
Enzymes [BR:
dbk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DGMP_09380
DNA replication proteins [BR:
dbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DGMP_09380
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DGMP_09380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
Motif
Other DBs
NCBI-ProteinID:
BCL60245
UniProt:
A0A8D5JNK5
LinkDB
All DBs
Position
complement(996048..998513)
Genome browser
AA seq
821 aa
AA seq
DB search
MSAEFTHLHVHTQYSLLDGAIRLTDLLDKCKEYGMDSVAVTDHGAMYGALEFYKKAKAAD
IKPIVGCELYIAPGDMRDRKKIDGEVAFHIVLLAMDHGGYQNLMKMASIAQFEGFYYKPR
IDMDVLRAHNEGVIALTACLHGQVPYLIRKKDMDGARKKAQELYDIFGDRLYFEIQENGI
AEQKPVNEGLISLGRDMGIKVVATNDCHYLNREEAHAHEILLCIQTGKTINDPKRFRFST
DEFYFKSQETMKKSFAYCPESIATSREITDRCNLEIEFGNYYFPNFEVPEGESLDSLFET
ACRDGLQERFNDMRRAGTFSPEVEKTYTNRLESEIDVIRTMGFPAYFLIVADFINWAKNH
DIPVGPGRGSGAGSLAAYCMRITNIDPIPYGLIFERFLNIERKSMPDFDVDFCQERRGEV
IDYVRNKYGGAAHVAQIVTYGSMKARGVIRDVGRALDIPFGEVDKVAKLVPDQLKMTIKK
ALEEEPKLQEMADSDPRIAELLSVSKTLEGLARHTSTHAAGVVVSPKPMTHYLPTCRGSN
EETLTQYDMKHTEMTGLIKFDFLGLKTLTVIDKALKHIEQDIGKKLDIDAIPMDDIKTYD
LLCSGDALGVFQLESSGMRELLVKMAPTQFSDLIALVALYRPGPLDSGMVDDFVKTKHGK
ATANYPLPEIKPVLEETYGVIVYQEQVMKIANILASYSLGDADILRRAMGKKIEEVMDEE
RVKFMAGARKNNHPEDKAEYIFDLMAKFAGYGFNKSHSAAYALICYQTAYLKAHFAPQFM
AALLSCDMNNTDKVVLYINECREHNIEVLPPTLTKVSKISV
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcagaattcacccatcttcatgttcacacccaatacagcctgctggacggagct
attcgcctgaccgatctccttgataaatgtaaggaatacggcatggacagtgtagcggta
actgaccatggcgcaatgtatggagctctggaattttacaagaaagcaaaggcagccgat
ataaaaccgattgtcggttgcgaactgtatattgcccccggtgatatgcgagacagaaaa
aaaatagatggtgaagttgcctttcatatcgtcctgcttgccatggaccacggcggatat
cagaacctgatgaagatggccagtatcgcccagtttgaagggttttattataaaccgaga
atcgatatggacgttctcagggcccacaacgaaggagtcattgccctgacagcctgtcta
catggccaggtcccctaccttatccgtaaaaaagatatggacggggcgcggaaaaaggct
caggaactgtatgacattttcggagaccgactctatttcgaaattcaggaaaacggtata
gccgaacaaaaacctgtcaatgaaggattgatctccctcggcagagacatgggaatcaag
gttgtggccaccaatgactgccattacctgaacagggaggaggcacatgcccacgaaatc
ctgctctgtatccagaccggtaaaaccataaatgaccctaaacgattcaggttttcaaca
gacgagttttacttcaagtcacaggaaaccatgaaaaagagttttgcctactgtccggaa
tccatagcgaccagtcgtgaaataacggatcgttgtaacctggaaattgaattcggcaac
tactatttccctaatttcgaagttccggagggagaaagtcttgattccctctttgaaacg
gcctgtcgggacggcctgcaggaacgattcaatgatatgcgcagggccggaactttttct
cccgaggtcgaaaaaacgtatacaaaccgacttgagtcggaaattgatgtcatccgtacc
atgggatttcccgcttatttcctcattgtcgccgacttcatcaactgggcaaaaaaccac
gatattccggtggggccgggacgtggatcaggtgccggaagtcttgctgcctattgcatg
cgcatcaccaatatagaccccattccctatggactgatctttgaacgttttctcaatatc
gaacgaaaatcaatgcccgacttcgacgtggatttctgccaggaacgaagaggcgaggtc
attgactacgtccgcaacaagtacggtggtgccgctcatgtggctcagatagttacttac
ggatccatgaaggccagaggagtaatccgcgatgtaggcagggcccttgacatccctttt
ggagaagtggacaaggtggcaaaactggttcccgaccagctgaaaatgaccatcaaaaaa
gccctggaggaagaacctaaactccaggaaatggccgacagtgacccccgtattgctgaa
cttctttccgtttcaaagacccttgaagggctggcacgtcacacctcaacccatgccgcc
ggagtggtcgtctccccaaaaccgatgacccattatctgccgacctgtcgggggagcaac
gaagaaaccctgacccagtatgatatgaaacataccgagatgaccggattgatcaaattc
gatttcctcggtttgaaaacactcaccgttatcgacaaggctctcaaacacattgaacag
gacattggaaaaaaactcgatatcgacgccattcccatggatgatatcaaaacctatgac
cttctctgcagtggggatgccctgggtgttttccaactggaaagctcaggaatgcgggaa
cttctcgtaaaaatggccccaacccagttcagtgatcttatcgctctggtggccctttat
cgccccggccccctggattcagggatggtggacgactttgtcaaaaccaaacacggcaag
gccacagccaattatccgctgccggagatcaaaccggtcctggaagaaacgtatggagtc
atcgtctaccaggaacaggtcatgaaaattgctaatattctggccagttattccctggga
gacgcggatatcctccgccgggcaatggggaagaagatagaagaagtcatggatgaagaa
cgagtcaaattcatggctggtgccagaaagaacaatcatcctgaggataaggccgagtat
atttttgatcttatggccaaatttgcgggatacggtttcaacaaatcccactcagccgcc
tatgcactgatatgctaccagacagcctatctcaaggcccatttcgcaccccagttcatg
gctgctctgctctcctgcgatatgaacaacacggataaggttgttctctatatcaacgag
tgcagggagcacaatattgaagtcctccccccgacattaacgaaagtgtcaaagatttca
gtgtag
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