Desulfomarina profundi: DGMP_10440
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Entry
DGMP_10440 CDS
T07650
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
dbk
Desulfomarina profundi
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbk03400
]
DGMP_10440 (sbcC)
DNA repair and recombination proteins [BR:
dbk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DGMP_10440 (sbcC)
Archaeal homologous recombinant proteins
DGMP_10440 (sbcC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
SMC_N
AAA_21
Flt3_lig
DUF1664
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BCL60351
UniProt:
A0A8D5JQS7
LinkDB
All DBs
Position
complement(1120848..1124483)
Genome browser
AA seq
1211 aa
AA seq
DB search
MKILHLRFRNLNSLVGSWAVDFTTPDFRAGNIFAITGPTGSGKSTILDAICLALYGKTPR
LESISKSTNEIMSRRTGECFSEVTFSTAKGVFRCHWAQHRARRQPAGDLQPPKHEIVAEE
TGRILESKLRNVLKKVTEVTGMDFDRFTRSVLLAQGNFNKFLEATSDEKAPILEQITGTT
IYSEISQHSHHRWKEEKEKLNRLKQTRDTFTLIPEEELSQLYRTIADHDTDLTKTRQLLK
QVHTKLDWLKNIAHLEEQITQLKAELSDVETRWKKEKPSHQRINKAEKARLLHDTCRMIH
QLRKNIEKNSNELERSRKEAGNITVEMEQARQEVNKSASNYSRQVQEKNASETGAKEARR
LDLLINTGQQELARLQKTVNEEKLNIEHLEEKKLAIRKKQRELEKELDEQTKTIENNRYL
ADLAEKTAIIRQKISNHDKKRVEETLLTQKHKNIELEITEKKKTVREWEKKRETARNRLQ
QLFKEKEHISEQFARSPATSLHFLYEEADTLKKSLETLLLIDELEEKKVTVQRHLTDCDK
GRRTLDGEYTQLTDRIERTRSERTEKRDTITKLEELVLLHNKIEQFEAERAKLKKNSPCP
LCGSQHHPFLATEHITTPAKDNYRQELLQEQENLEEISGRLTRLQTDLGVIAEQRKQLEK
ERKLLIDNLDKIKAELSMLKRKAVNSTCTDLRNRQKNIAEKIKKTAGLQKRIEEINDHIS
TVKDDLSAGEKHLQQRSYELEKSRDEKKRLAMEIETAVNERKKLFSAITSECRRYKIALA
DGDNLSYLNVKLRDLAGLWTKWHGKMDELKSSMQATDAERDKVVYSLAHAEAELEKKLLH
NQEIKKKIELLNEERIHIYGRKDPDREEQRLKQLLDEAEKTRKKHQKILDQLEKQSITLS
ERIEILKINRKNILQELDKLQTRFQLDLAEKGFRSEEDLEASLIPKDILATMTAERDSLI
RRRVELSALVEDCANRFAREQQQKLTLKPERELQLQAAGLEKKINELQESLGALKNRITQ
QEHIKKQFAGQQEIIRQQEKECHYWDQLHHLIGSADGKKFRNFAQGLTFEQMVYHANTIL
MKMNDRYLLVRDRTKPLELNVIDNYQAGELRPTRNLSGGESFLVSLALAFGLASMASKNI
QVDSLFLDEGFGTLDEESLETALASLGRLQQDGKTIGIISHVPAIRERIPVQIRIEPGYD
GTSKITGAGVS
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatactgcacctccgattccgtaatctgaactctcttgtgggaagctgggctgtt
gatttcaccacaccggatttcagggcgggaaacattttcgctataaccggtcccaccggc
tccggaaaaagcaccatcctcgatgccatctgccttgcactctacgggaagacaccacgt
ctggagtcaatcagcaaaagtaccaacgaaattatgagccgcagaaccggggaatgtttt
tcagaagtcaccttttccactgcaaagggtgtttttcgctgccactgggcccagcataga
gccaggcggcagcccgctggagaccttcaacccccgaaacacgaaatagttgcagaggaa
accggtcggatactggaatcaaaactgcggaatgttctgaaaaaagtaacagaagtcaca
ggaatggactttgatcgttttacccggtccgtcctgctggcccagggaaatttcaataaa
ttccttgaagctacttccgatgaaaaagcccccattcttgaacagataacaggaacaacc
atctattccgagatatcacagcactcacaccatcgctggaaggaagaaaaggaaaagctg
aacagactgaaacagaccagagatacattcactcttatccctgaagaagagctgtcccaa
ctgtacagaacgattgctgaccatgacaccgatctgacaaagacacgacagcttctcaaa
caggttcataccaaactcgactggctgaaaaatattgcacatctcgaagaacagatcacg
caactcaaagctgaactgtcagatgtggaaacccggtggaaaaaagaaaaaccttcacat
cagagaatcaacaaggccgaaaaagccagactcctccatgatacctgtcggatgattcac
cagctgcgaaaaaatatagaaaaaaacagcaatgaactggagagaagcagaaaagaagca
gggaatattacagttgagatggaacaagccagacaagaagttaataagagtgcttccaac
tacagtcgccaagttcaagagaaaaacgcaagtgaaactggcgcaaaagaggcaagacgc
cttgatcttctcatcaatacaggacaacaggaacttgcccggctccaaaagactgtcaat
gaagagaaactgaatattgaacacctggaagaaaaaaaactggctatccggaaaaaacaa
agagaactggaaaaagaactggatgaacagacaaaaaccattgaaaacaacaggtatcta
gccgacctagcggaaaaaacagccattatccgacagaagatcagcaatcatgataaaaaa
agagtcgaagaaaccctgcttacccaaaagcataagaatattgagctggaaattacagag
aagaaaaaaactgtccgagagtgggaaaaaaagagagaaactgcgcgaaacaggcttcag
cagctttttaaagaaaaagaacacatttctgaacagtttgccaggagtccagccacttcc
ctgcattttctgtatgaagaggctgatactctgaaaaaatcgcttgaaaccctacttctc
attgatgaactggaagagaaaaaggtaacagtgcaacgtcatctcactgactgtgacaag
ggcagaagaacacttgacggggagtacacgcaactgacagaccgtattgaaagaacaaga
tcagaacgtacagaaaaaagagacacaataacaaaacttgaagaactggtacttctccat
aacaagatagaacagtttgaagcagaaagggcaaaactgaaaaaaaacagcccctgccct
ctgtgcggctcgcaacaccatccttttcttgccacagaacatatcactactcctgcaaaa
gacaattaccggcaggaactcctccaggaacaagagaatctggaagaaatatcaggccga
ctcactcgcctgcagacagatcttggagtgatcgctgaacaaagaaagcagctggaaaaa
gagcgtaaacttctgattgacaacctggataaaattaaagcagaactgtccatgctcaaa
agaaaagctgtaaacagcacctgcactgatctcaggaacagacagaagaacatagcagaa
aaaataaaaaaaacagccggcctgcaaaagagaatagaagaaattaacgatcatatcagt
acggtaaaggacgatctctccgccggggaaaaacacctgcaacaaaggtcttatgaactg
gaaaaatcaagagatgaaaaaaaacgtctggccatggaaattgagacggctgtgaatgaa
aggaaaaaactgttctcagctatcaccagtgagtgcagacgctacaagattgccttggcc
gatggtgacaacctgtcttatttaaatgtaaaactccgggaccttgcgggtctctggaca
aaatggcatggaaaaatggatgaactgaaatcatccatgcaggcgacagatgctgaaaga
gacaaggttgtttattcgcttgcccatgccgaagctgaactggaaaaaaagcttttacat
aaccaggaaataaagaaaaagattgaacttctcaatgaagaacggatacatatttacggc
agaaaagatccggaccgggaggaacagcgactgaagcaactgctcgatgaagcggaaaaa
accagaaaaaaacatcagaaaattttggaccagcttgaaaaacaaagcattactctcagc
gaacgcattgaaattctgaaaataaacagaaaaaacattttacaggaactggataaactg
caaacccgtttccaactggatctggctgaaaaagggttcaggtctgaagaagatcttgag
gccagtctcattccgaaagatatcctggcaaccatgacagcggagcgggactcgctaatc
cgacgtcgggttgagctttcagccctggtggaagactgtgctaatcgatttgccagagaa
caacagcaaaaactgactttaaagcctgaaagagaacttcaacttcaggctgctggtctc
gaaaaaaaaataaatgaactgcaggaaagcttaggggcactgaaaaacagaataacacag
caggaacatatcaaaaaacagtttgccggtcagcaggaaataatcagacagcaggaaaag
gaatgtcattactgggatcagctccatcatcttatcggttcagccgatggcaaaaaattc
cgcaactttgcccagggactcacttttgaacagatggtttaccacgccaacacaatcctc
atgaaaatgaacgaccgttatctcctcgttcgtgatcgtacaaaacctcttgaactgaat
gtgattgacaactatcaggccggcgagctccggcccacgcgcaacctttccggtggagaa
tcttttcttgtcagccttgcccttgcctttggtctcgcctcaatggccagtaaaaacatc
caggtggattcactgtttcttgatgaaggttttggcaccctggatgaagaatctctcgag
acagcccttgcaagcctgggccgtctgcagcaggacggaaagacaatcggtatcatttct
cacgttcctgccatccgggaacgaattcccgtacagatcaggattgaaccgggatatgat
ggcacaagcaaaataaccggtgctggagtttcataa
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