Desulfomarina profundi: DGMP_16560
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Entry
DGMP_16560 CDS
T07650
Name
(GenBank) ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dbk
Desulfomarina profundi
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dbk03016
]
DGMP_16560
Enzymes [BR:
dbk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DGMP_16560
Transfer RNA biogenesis [BR:
dbk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DGMP_16560
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
DUF3340
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
BCL60963
UniProt:
A0A8D5JDE1
LinkDB
All DBs
Position
1787094..1789097
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AA seq
667 aa
AA seq
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MISTGKLIEYLDNGKFICAIVVESQPKRLRLINQNGREVNLPLSRVVHCSNETYDIGQSR
EELIRNLKEIAEKRLNLMTAIDLQELWELTSDESDSSFSPSFLAELIFGDLSNDDCVSAF
LRSVFCDRLFFKYSNGLIKVNSPEQVENLQIQRKKEEKKKQIITEGAAAVKDLFSREHPQ
KELDPLLRESLHLLRDYYVFGNDAKDANTARQLLKTAGLTSPHDPFHILVKAGLWGPNEN
IPLLKQELPVNFSLEARQQAEQLLQQGQDDLFNDPGRIDLTHLKPITIDGPTTLDFDDAL
TLEEQDGNYLVGIHISDVAHYVRPGDALFQEAMRRGTSIYFPEGQIPMLPRHLSQGICSL
IQDEIRAAFSFMILLSEDAEILRVKIIPSIIKVARRLTYDEVDRMIEKDGELKILNMLRK
KLRQRRIEKGALLLPFPDVNIFIDHQGQVHVNLGKSDTPARTIVSEMMILANSEAARYVS
DRMVPGLFRSQPKLKNRIVFGEDDDLFQNTLQRKQLPRGELSTTAKPHSGLGVSHYTTVT
SPIRRLLDLVMQHQLDSIIRRKEPCFTEDMCKDFTSILSRTVTAANNVRHLRQRYWLLKY
LSDRKGQLINALVIQVGPRRINLLLTDILMDIDLPKPAGRKISANSTVQVRILKADPLDN
VVRFDWP
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgattagcacaggaaagctcatagaatatctcgataacggcaaatttatctgcgccata
gtcgtggaaagccagcctaaacgacttcgcttgatcaatcagaatggaagggaggtcaat
ctgcccctttcaagagttgttcattgctcaaatgaaacatatgacattggacaaagtcgg
gaggagttgatacgtaatctcaaagaaattgccgaaaaaagactcaacctgatgacagct
attgatcttcaggaactctgggaattgacctccgacgaatccgattcatcattcagcccg
tcttttctggctgaacttatcttcggcgatctttccaatgatgactgtgtctccgctttt
ttaagatctgtcttttgcgacagacttttttttaaatacagtaatggactgataaaggtc
aacagcccagaacaggttgaaaacctgcagattcaacgtaaaaaagaagagaaaaaaaag
cagattatcactgaaggtgctgctgcggtcaaagatcttttttcaagagagcacccgcaa
aaagagctggatcctcttctcagggaatctctccatctgctcagggattattatgtcttc
ggcaatgatgcaaaagacgcaaataccgcaagacagctcctgaaaacagcaggcctcacc
agtccccatgacccatttcatatccttgttaaagccggactctggggccctaatgaaaac
attcccctactcaaacaagaactccccgtcaatttttctctggaggcaagacagcaggct
gaacagttactgcaacaggggcaggacgacctgttcaatgatccaggaagaatcgacctg
acccatctgaaaccgataaccatcgacggccccaccacattggattttgatgatgccctc
accctggaagaacaggatggcaattatcttgtgggtattcatatttctgatgtcgcccat
tatgtaagaccaggagatgcactctttcaggaggcaatgcggcgtgggacttccatctat
tttccggaaggtcagatccccatgcttccccggcacctttcccagggaatctgcagcctt
attcaggatgagatcagggccgctttcagtttcatgattctgctgtcagaggatgctgaa
atactgagagtcaagatcataccgtcaatcatcaaagtcgccagacgactgacctatgat
gaagtggatcggatgattgaaaaagacggggaactcaagatactcaatatgctgaggaaa
aagttgaggcagcgcaggattgaaaagggagcccttcttctgccctttcccgacgtaaat
attttcattgatcaccagggtcaggttcatgttaatctggggaaaagtgacactcccgcc
agaacaatcgtatctgaaatgatgattctggccaacagcgaagctgccagatatgtttcc
gacagaatggttcccggactcttcagatctcagcccaagttgaaaaacagaattgtattt
ggagaagacgacgatctgtttcaaaataccctgcagagaaaacaactgccaaggggtgaa
ctgtccacgaccgccaagccgcactccggcctgggtgtatcgcactatacaactgttact
tctcccataagaaggctgctggatctcgttatgcaacaccagcttgactcgattataaga
agaaaggaaccatgttttaccgaggatatgtgtaaggatttcacatctattctctccaga
acggttacggcagccaataacgtacgccatcttcggcagcgttactggctgcttaaatat
ttatctgatcgaaaaggtcagctgatcaatgcacttgttattcaggtaggccccagacgg
ataaaccttctgctcaccgacattctcatggacatcgatctgcctaaacctgcgggcaga
aaaatatctgcaaacagcacggtccaggtaagaatcctgaaagcagatcccctggataac
gttgtgcgttttgactggccatga
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