Desulfomarina profundi: DGMP_28970
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Entry
DGMP_28970 CDS
T07650
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dbk
Desulfomarina profundi
Pathway
dbk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DGMP_28970 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dbk03019
]
DGMP_28970 (rhlB)
Enzymes [BR:
dbk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DGMP_28970 (rhlB)
Messenger RNA biogenesis [BR:
dbk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DGMP_28970 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Utp25_C
NAT10_TcmA_helicase
P-loop_SecA
DUF2529
Str_synth
CMS1
Motif
Other DBs
NCBI-ProteinID:
BCL62204
UniProt:
A0A8D5FPU9
LinkDB
All DBs
Position
complement(3141511..3142737)
Genome browser
AA seq
408 aa
AA seq
DB search
MRAIADQGFKYCTAIQEKALADVLAGKDLVGKANTGTGKSAVFLIAILARLLQEEKERGK
AVKGVRALVLAPTRELVMQIAKDAEGLAKYCNLAVRPVYGGVDYRKQMDSLRNKRCDLVV
ATPGRLIDFLGKNVLSLAQCSILVLDEADRMLDMGFIPDVRRIVGRTPHREKRQTMLFSA
TVPEDVKRLAMQWCVEPKMVEAEPEQVAVETVEQVVYLATSEDKYSILYNLIKQNEQERI
IVFANMKNETKRLADRLKRNGIDCVLLSGDVQQNKRMTRLEQFRSGKVKVLVATDVAGRG
IHIEGITFVVNYTLPYEPEDYVHRIGRTGRAGAAGRAVSFACEEGSFYLPDIEEYIGRKL
DCVQPDESLLATPPKLRKAAPAKKGGSYRRRGGKKRNSTRKTRNEVKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagggcaatagccgatcagggctttaaatattgcactgccattcaggaaaaggctctt
gccgatgttctggcgggcaaggatcttgttggcaaggcaaataccgggacagggaaaagt
gctgtgtttcttatcgcaattctggccaggctgctgcaggaagagaaggaaagaggcaaa
gctgtaaaaggggtccgggccctggtgctggcccctaccagggagctggtcatgcagatt
gcaaaggacgcggaagggttggccaagtactgcaatcttgcagtgagaccggtttacggt
ggtgtcgactatcgtaaacagatggacagcctgcgcaataagagatgtgacttggtagtg
gctacccccggacgtttgattgattttctaggaaaaaatgtcctctctttggctcaatgc
tccattctcgtcctggatgaggcggatcgcatgcttgatatgggttttattcctgatgtc
cggagaattgtcggacgtacgccacatagggaaaagcggcagaccatgctgttttctgca
acggtaccggaggatgtcaaacgactggccatgcagtggtgtgttgaaccgaaaatggtt
gaagctgagccggaacaggtggcggtcgaaacggtagagcaggtagtttaccttgcaact
tctgaagacaaatattcaattctctataatcttatcaaacagaacgagcaggagagaata
attgtctttgccaatatgaagaatgagacaaaaaggctggcagacaggctgaaacgaaat
ggtattgactgcgttctcctttccggggatgttcagcagaataaacggatgacgaggctt
gagcagttccgctccggcaaggtgaaagtccttgtggcaacggatgttgccggaagaggc
atacatatagaaggaatcacctttgttgtcaattatacactgccatatgagcccgaagat
tatgttcatcgtatcgggcggacaggccgggccggtgcggcgggacgggctgtaagtttt
gcctgcgaggaagggtcgttttatcttcctgatattgaagaatatatcggcagaaaactt
gactgtgtccaacctgatgaatctcttctcgccactccgccaaaactccgcaaagctgca
cccgctaaaaagggtggttcctaccggagacggggtggaaaaaagaggaactccacacga
aaaaccaggaatgaggtaaaaaaataa
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