KEGG   Desulfomarina profundi: DGMP_35680
Entry
DGMP_35680        CDS       T07650                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
dbk  Desulfomarina profundi
Pathway
dbk02020  Two-component system
dbk02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:dbk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    DGMP_35680 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    DGMP_35680 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dbk03021]
    DGMP_35680 (rpoN)
Transcription machinery [BR:dbk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     DGMP_35680 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID VHL_C
Other DBs
NCBI-ProteinID: BCL62875
UniProt: A0A8D5FL14
LinkDB
Position
complement(3865057..3866514)
AA seq 485 aa
MALELRLQLKLAQKLVMTPQLRQAIKLLQLNRLELSDALQAEIEQNPALEEDLSTPETIE
NPLSLSSTVEQTGEEGRELDVTEKVEISDKMGEVNWEDYANNFDSNFSFAHETPPADTPS
QFEFISEKPGLMSYLQWQLAHCELDEKEMEIALFIIGNLNRYGFLEVDLDQIQAETGCDR
DDAEYVLEVIQDLDPPGIAARDVSESLYLQLERMGKENSLAAEIVKNHLPLLVTRNFKAI
ARATGKKKPEISRAIDFITSELSPFPGLPYTNENTNYIVPDVYVRKIDGEYVIRLNDDDL
PRLKLSSHYQELLENCKDLEKKSKNYISDKLKNADWFIKSLHQRQRTIYKVVESLLKFQR
DFFEHGPHYLRPLILKDVADDIEMHESTISRVTSNKYVHTPQGIYELKYFFSTAIPRTGG
DALAAESIKARIKKMIREEDKAKPLSDNAIAKKLAEQNIKIARRTVAKYRDQLKILPVKH
RRHAK
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggccctcgaactcagactccagctcaagctggcccagaaactcgtaatgacgccccag
ctgcgtcaggccatcaagctccttcagctcaacaggctggaactctccgatgctctccag
gcggaaattgaacagaatccggccctggaagaggatctgtccacccctgaaaccatcgaa
aatccattgtccctctcctcaaccgttgaacagaccggcgaagaaggcagggagctggat
gtcacggaaaaagtggaaatatccgataagatgggtgaggtaaattgggaagattacgct
aataattttgattcaaacttctcctttgcccacgaaacaccccccgccgataccccatcc
caattcgaatttatttccgaaaaaccgggattgatgtcctacctgcaatggcagcttgcc
cattgcgaactggacgaaaaggagatggaaattgccctgttcatcatcggcaacctcaac
cgctacggttttctggaagtcgacctggaccagatacaggctgaaaccggctgcgacagg
gatgatgctgaatatgttcttgaagtgattcaggaccttgatcctccgggcattgcagcc
agggacgtcagtgagtcactctacctgcagcttgagaggatgggtaaggaaaacagcctg
gctgccgaaatagtaaaaaaccacctgccccttcttgttacccgcaacttcaaggcaatt
gccagagctaccggaaagaagaaacctgaaatcagtcgggcaattgattttattacttct
gaactctctccttttccgggactgccctacaccaacgaaaataccaattatattgtccct
gatgtctacgtccgcaagatagacggcgaatatgtcatccgccttaatgatgatgacctg
ccgagactgaagctctcctcccattaccaggagttgctggaaaactgcaaggatctggaa
aaaaaatcaaagaactatatcagcgacaagcttaaaaatgccgactggtttatcaagtcc
ctgcaccagcggcagcgcaccatatacaaggtcgtggaaagcctgttgaaatttcagcgt
gattttttcgaacacggcccccattacctgcgtcccctgattttaaaagatgtggccgat
gatattgaaatgcacgaatccaccatcagccgggtcacctccaacaaatatgtccataca
ccccagggcatttacgagctgaaatacttcttctccacggccattccccgcactggagga
gatgcactggccgctgaatcgatcaaggcgcggatcaagaaaatgatcagggaagaggac
aaggccaaaccgctcagcgataatgccattgcaaaaaaactggctgaacagaatataaaa
attgccagaaggacagtcgccaagtacagggaccagttgaaaatccttccggtcaaacat
cgcagacacgccaaataa

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