Desulfomarina profundi: DGMP_35680
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Entry
DGMP_35680 CDS
T07650
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
dbk
Desulfomarina profundi
Pathway
dbk02020
Two-component system
dbk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dbk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DGMP_35680 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DGMP_35680 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dbk03021
]
DGMP_35680 (rpoN)
Transcription machinery [BR:
dbk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DGMP_35680 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
VHL_C
Motif
Other DBs
NCBI-ProteinID:
BCL62875
UniProt:
A0A8D5FL14
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All DBs
Position
complement(3865057..3866514)
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AA seq
485 aa
AA seq
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MALELRLQLKLAQKLVMTPQLRQAIKLLQLNRLELSDALQAEIEQNPALEEDLSTPETIE
NPLSLSSTVEQTGEEGRELDVTEKVEISDKMGEVNWEDYANNFDSNFSFAHETPPADTPS
QFEFISEKPGLMSYLQWQLAHCELDEKEMEIALFIIGNLNRYGFLEVDLDQIQAETGCDR
DDAEYVLEVIQDLDPPGIAARDVSESLYLQLERMGKENSLAAEIVKNHLPLLVTRNFKAI
ARATGKKKPEISRAIDFITSELSPFPGLPYTNENTNYIVPDVYVRKIDGEYVIRLNDDDL
PRLKLSSHYQELLENCKDLEKKSKNYISDKLKNADWFIKSLHQRQRTIYKVVESLLKFQR
DFFEHGPHYLRPLILKDVADDIEMHESTISRVTSNKYVHTPQGIYELKYFFSTAIPRTGG
DALAAESIKARIKKMIREEDKAKPLSDNAIAKKLAEQNIKIARRTVAKYRDQLKILPVKH
RRHAK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgaactcagactccagctcaagctggcccagaaactcgtaatgacgccccag
ctgcgtcaggccatcaagctccttcagctcaacaggctggaactctccgatgctctccag
gcggaaattgaacagaatccggccctggaagaggatctgtccacccctgaaaccatcgaa
aatccattgtccctctcctcaaccgttgaacagaccggcgaagaaggcagggagctggat
gtcacggaaaaagtggaaatatccgataagatgggtgaggtaaattgggaagattacgct
aataattttgattcaaacttctcctttgcccacgaaacaccccccgccgataccccatcc
caattcgaatttatttccgaaaaaccgggattgatgtcctacctgcaatggcagcttgcc
cattgcgaactggacgaaaaggagatggaaattgccctgttcatcatcggcaacctcaac
cgctacggttttctggaagtcgacctggaccagatacaggctgaaaccggctgcgacagg
gatgatgctgaatatgttcttgaagtgattcaggaccttgatcctccgggcattgcagcc
agggacgtcagtgagtcactctacctgcagcttgagaggatgggtaaggaaaacagcctg
gctgccgaaatagtaaaaaaccacctgccccttcttgttacccgcaacttcaaggcaatt
gccagagctaccggaaagaagaaacctgaaatcagtcgggcaattgattttattacttct
gaactctctccttttccgggactgccctacaccaacgaaaataccaattatattgtccct
gatgtctacgtccgcaagatagacggcgaatatgtcatccgccttaatgatgatgacctg
ccgagactgaagctctcctcccattaccaggagttgctggaaaactgcaaggatctggaa
aaaaaatcaaagaactatatcagcgacaagcttaaaaatgccgactggtttatcaagtcc
ctgcaccagcggcagcgcaccatatacaaggtcgtggaaagcctgttgaaatttcagcgt
gattttttcgaacacggcccccattacctgcgtcccctgattttaaaagatgtggccgat
gatattgaaatgcacgaatccaccatcagccgggtcacctccaacaaatatgtccataca
ccccagggcatttacgagctgaaatacttcttctccacggccattccccgcactggagga
gatgcactggccgctgaatcgatcaaggcgcggatcaagaaaatgatcagggaagaggac
aaggccaaaccgctcagcgataatgccattgcaaaaaaactggctgaacagaatataaaa
attgccagaaggacagtcgccaagtacagggaccagttgaaaatccttccggtcaaacat
cgcagacacgccaaataa
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