KEGG   Desulfarculus baarsii: Deba_0980
Entry
Deba_0980         CDS       T01284                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
dbr  Desulfarculus baarsii
Pathway
dbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Deba_0980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dbr03019]
    Deba_0980
   03009 Ribosome biogenesis [BR:dbr03009]
    Deba_0980
Enzymes [BR:dbr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Deba_0980
Messenger RNA biogenesis [BR:dbr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Deba_0980
Ribosome biogenesis [BR:dbr03009]
 Prokaryotic type
  rRNA processing factors
   Deba_0980
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP DnaJ_CXXCXGXG Ogr_Delta
Other DBs
NCBI-ProteinID: ADK84350
UniProt: E1QFL4
LinkDB
Position
1091752..1093662
AA seq 636 aa
MIKRMLINAREPGELRVALVEGGRLEAFFVETAAREQTRGNIYKGVVVNVERSLQAAFVD
YGAGRNGFLQISDLCPAFIKGAGHNGRVNKPIQEVLRAGHELLVQVVKEETATKGASLTT
FFSIPGQYMVLTPGHESQGVSRKIESEAERERIKEALAGASCPEGIGVIARTAAEGRSKR
EIQQNLQQLLRLWLDIKKRGDSAKPRTLIHREEELAVRVVRDHFTSDVTEILVDDQDVFN
RLQRYLAVVSPRRKTQLKLYTDPRPIFQKSQLEQQILSIYQPTVPLPSGGSIVIHPTEAL
VSIDVNSGRNVSGKQIEETALNVNKEAAVEVARQLRLRDLGGLVVVDFIDMRDRANQRTV
RKVFADELKKDKAKITIGAISRFGLLELSRQRIRPPIDFGATMVCPHCQGRGLVRTTEAI
GRGVMRALEHKLGDGDKSGLRVRVGTEAANYLQNVRRADLMRLEERYGLCIEVLADPGLS
PEESRMERFEATWTPPQPAAPPVLQAVIEAPEEPEPEEFEEDEADGEGAVEAAAADEPAK
KSSSRRRRGGRRKSAKKDAIAPAAQPQAGPAPSVEAKSIVETPVAEQSGEPTAAKKRRRR
PSSRRRRKPAEGQAAEARSAIAAAPEHGGVIGDEAD
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgattaaacgaatgctgataaatgcccgtgaacccggcgaattgcgggtcgcgttggtg
gaaggcggccgactggaggcctttttcgtcgagacggccgcccgcgaacagacgcggggc
aacatctacaaaggcgtggtggtcaacgtcgaacgcagcctacaggcggcgttcgtggac
tacggcgcggggcgcaacggctttttgcagataagcgacctgtgcccggccttcatcaaa
ggcgcgggccacaacggccgcgtgaacaagcccatccaggaggtgctgcgggccggccac
gagcttttggttcaggtggtcaaagaggaaaccgccaccaagggcgccagtctgaccacg
tttttttccatccccggccaatacatggtgctgacgcccggccacgagagccagggcgtc
tcgcgcaagatcgaatccgaggccgagcgcgagcgcatcaaggaagccctggccggcgcg
tcgtgccccgagggcatcggagtcatcgcccgcaccgccgccgaaggccgctccaagcgc
gagatccagcaaaacctgcagcagttgttgcgcctgtggctggacatcaagaaacgcggc
gacagcgccaagccgcgcacgctgatccaccgcgaggaagaactggccgtgcgcgtggtg
cgcgaccacttcaccagcgacgtcaccgagatcctggtcgacgatcaagacgtcttcaac
cgcctgcaacgctatctggccgtggtcagcccccggcgcaagacccagctcaagctctac
accgaccccaggcccattttccagaaaagccaactggaacaacagatcctgtcgatatac
cagcccactgtcccgctgccctccggcggcagcatcgtcatccaccccaccgaggcgctg
gtgtccatcgacgtcaactccggccgcaacgtcagcggcaagcagatcgaggagacggcg
ctcaacgtcaacaaggaggccgccgtggaggtggcccgccagttgcgcctgcgcgacctg
ggcggcttggtggtggtcgatttcatcgacatgcgcgaccgcgccaaccagcgcaccgtg
cgcaaggtgttcgccgacgagctgaaaaaagacaaggccaagatcaccatcggggccatc
agccgctttggcctgctggagcttagccgccagcgcattcggccgcccatcgatttcggc
gcgaccatggtctgcccccactgccagggccgcggcctggtgcgcaccaccgaggccatc
ggccgcggcgtcatgcgcgccctggagcacaagctgggtgatggcgacaagagcggcctg
cgcgtgagggtgggcaccgaggcggccaactatctgcagaacgtccggcgcgccgacctg
atgcgcttggaggagcgctacggcctgtgcatcgaggtgttggccgaccccggcctttcg
cccgaggaatcgcgcatggagcgtttcgaggcgacgtggactccgccccagccggccgcg
ccgccggtgcttcaggccgtaatcgaggccccggaagagcccgagcccgaggagttcgag
gaagacgaggccgatggcgaaggcgccgtggaggctgccgccgccgacgagccggcgaag
aagtcgtcctcgcggcggcgcaggggcgggcggcgcaaatcggccaaaaaagacgcgatc
gcgccggcggcccaaccccaggccggccccgcgccgtcggtcgaggccaaatcaatcgtc
gaaaccccggttgccgagcaatccggcgagccgacggcggccaaaaaacggcgtcgccgg
ccatcgtccagacggcgtcgcaagccggccgaggggcaggccgccgaggccagatcggcc
atcgcggccgcgcccgagcacggcggcgtgatcggcgacgaggccgattga

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