Desulfarculus baarsii: Deba_0980
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Entry
Deba_0980 CDS
T01284
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dbr
Desulfarculus baarsii
Pathway
dbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deba_0980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dbr03019
]
Deba_0980
03009 Ribosome biogenesis [BR:
dbr03009
]
Deba_0980
Enzymes [BR:
dbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Deba_0980
Messenger RNA biogenesis [BR:
dbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Deba_0980
Ribosome biogenesis [BR:
dbr03009
]
Prokaryotic type
rRNA processing factors
Deba_0980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
ADK84350
UniProt:
E1QFL4
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All DBs
Position
1091752..1093662
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AA seq
636 aa
AA seq
DB search
MIKRMLINAREPGELRVALVEGGRLEAFFVETAAREQTRGNIYKGVVVNVERSLQAAFVD
YGAGRNGFLQISDLCPAFIKGAGHNGRVNKPIQEVLRAGHELLVQVVKEETATKGASLTT
FFSIPGQYMVLTPGHESQGVSRKIESEAERERIKEALAGASCPEGIGVIARTAAEGRSKR
EIQQNLQQLLRLWLDIKKRGDSAKPRTLIHREEELAVRVVRDHFTSDVTEILVDDQDVFN
RLQRYLAVVSPRRKTQLKLYTDPRPIFQKSQLEQQILSIYQPTVPLPSGGSIVIHPTEAL
VSIDVNSGRNVSGKQIEETALNVNKEAAVEVARQLRLRDLGGLVVVDFIDMRDRANQRTV
RKVFADELKKDKAKITIGAISRFGLLELSRQRIRPPIDFGATMVCPHCQGRGLVRTTEAI
GRGVMRALEHKLGDGDKSGLRVRVGTEAANYLQNVRRADLMRLEERYGLCIEVLADPGLS
PEESRMERFEATWTPPQPAAPPVLQAVIEAPEEPEPEEFEEDEADGEGAVEAAAADEPAK
KSSSRRRRGGRRKSAKKDAIAPAAQPQAGPAPSVEAKSIVETPVAEQSGEPTAAKKRRRR
PSSRRRRKPAEGQAAEARSAIAAAPEHGGVIGDEAD
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacgaatgctgataaatgcccgtgaacccggcgaattgcgggtcgcgttggtg
gaaggcggccgactggaggcctttttcgtcgagacggccgcccgcgaacagacgcggggc
aacatctacaaaggcgtggtggtcaacgtcgaacgcagcctacaggcggcgttcgtggac
tacggcgcggggcgcaacggctttttgcagataagcgacctgtgcccggccttcatcaaa
ggcgcgggccacaacggccgcgtgaacaagcccatccaggaggtgctgcgggccggccac
gagcttttggttcaggtggtcaaagaggaaaccgccaccaagggcgccagtctgaccacg
tttttttccatccccggccaatacatggtgctgacgcccggccacgagagccagggcgtc
tcgcgcaagatcgaatccgaggccgagcgcgagcgcatcaaggaagccctggccggcgcg
tcgtgccccgagggcatcggagtcatcgcccgcaccgccgccgaaggccgctccaagcgc
gagatccagcaaaacctgcagcagttgttgcgcctgtggctggacatcaagaaacgcggc
gacagcgccaagccgcgcacgctgatccaccgcgaggaagaactggccgtgcgcgtggtg
cgcgaccacttcaccagcgacgtcaccgagatcctggtcgacgatcaagacgtcttcaac
cgcctgcaacgctatctggccgtggtcagcccccggcgcaagacccagctcaagctctac
accgaccccaggcccattttccagaaaagccaactggaacaacagatcctgtcgatatac
cagcccactgtcccgctgccctccggcggcagcatcgtcatccaccccaccgaggcgctg
gtgtccatcgacgtcaactccggccgcaacgtcagcggcaagcagatcgaggagacggcg
ctcaacgtcaacaaggaggccgccgtggaggtggcccgccagttgcgcctgcgcgacctg
ggcggcttggtggtggtcgatttcatcgacatgcgcgaccgcgccaaccagcgcaccgtg
cgcaaggtgttcgccgacgagctgaaaaaagacaaggccaagatcaccatcggggccatc
agccgctttggcctgctggagcttagccgccagcgcattcggccgcccatcgatttcggc
gcgaccatggtctgcccccactgccagggccgcggcctggtgcgcaccaccgaggccatc
ggccgcggcgtcatgcgcgccctggagcacaagctgggtgatggcgacaagagcggcctg
cgcgtgagggtgggcaccgaggcggccaactatctgcagaacgtccggcgcgccgacctg
atgcgcttggaggagcgctacggcctgtgcatcgaggtgttggccgaccccggcctttcg
cccgaggaatcgcgcatggagcgtttcgaggcgacgtggactccgccccagccggccgcg
ccgccggtgcttcaggccgtaatcgaggccccggaagagcccgagcccgaggagttcgag
gaagacgaggccgatggcgaaggcgccgtggaggctgccgccgccgacgagccggcgaag
aagtcgtcctcgcggcggcgcaggggcgggcggcgcaaatcggccaaaaaagacgcgatc
gcgccggcggcccaaccccaggccggccccgcgccgtcggtcgaggccaaatcaatcgtc
gaaaccccggttgccgagcaatccggcgagccgacggcggccaaaaaacggcgtcgccgg
ccatcgtccagacggcgtcgcaagccggccgaggggcaggccgccgaggccagatcggcc
atcgcggccgcgcccgagcacggcggcgtgatcggcgacgaggccgattga
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