Desulfarculus baarsii: Deba_1142
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Entry
Deba_1142 CDS
T01284
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dbr
Desulfarculus baarsii
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dbr03016
]
Deba_1142
Enzymes [BR:
dbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Deba_1142
Transfer RNA biogenesis [BR:
dbr03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Deba_1142
BRITE hierarchy
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ADK84510
UniProt:
E1QIT7
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All DBs
Position
complement(1269446..1270012)
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AA seq
188 aa
AA seq
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MRLFVALELPAAVKDHARAVIDRLRGAGADVKWLDAATMHVTLKFMGEVDQALLGDVRRA
LAGATAGFGPLELRVGGCGVFPSPRRPNVVWLGIDGQAQRLAALAGRVDQALAQATGLPR
EKRPFTPHLTIGRVRQGRGSAQEALSLAVGALAELSGPAFQARAARLVQSTLTPRGAIHK
PIDEYPLA
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgttcgtggcgcttgagctgccggcggcggtcaaggaccacgccagggcggtg
atcgaccggctgcgcggcgcgggggctgacgtgaagtggctcgacgcggcgaccatgcac
gtgacgctcaaattcatgggcgaggtggatcaagccctgctgggcgatgtccgccgggcc
ctggccggggccacggccggctttgggccgctggagctgcgcgtgggcggctgcggcgtc
ttcccgagcccgcggcggccaaacgtggtatggttggggattgacggccaggcccagcgc
ttggccgccttggctggccgggtcgatcaagccctggcccaggccacgggcctgccccgc
gaaaaacgccccttcacgccgcatctgaccatcggccgcgtgcgccaagggcgcggctcg
gcccaggaggccctgtccctggccgtgggcgcgttggccgagctgtccggcccggccttc
caggcccgcgccgcgcggctggtgcaaagcacgctgacgccgcgaggcgccattcataaa
ccgatcgacgaatatcccctggcctga
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