Desulfarculus baarsii: Deba_1434
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Entry
Deba_1434 CDS
T01284
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dbr
Desulfarculus baarsii
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dbr03016
]
Deba_1434
Enzymes [BR:
dbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Deba_1434
Transfer RNA biogenesis [BR:
dbr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Deba_1434
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADK84802
UniProt:
E1QGV9
LinkDB
All DBs
Position
1602583..1604571
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AA seq
662 aa
AA seq
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MSDPVGQLVEFIDKNRLCLAFVQSAKKTKLNVLTSADKELSLPQGRVLLMTAGGGLAGRN
RQALVERLREVEVRREGLAQDVDVAGLWELVAEEAEPLSLADLAGLAHSGPLEGDHLSAT
LRALFNERWHFKMAGEQFVPLSAEQLEQKQLQSQREDARREQVDAAVDYLRGLADNGPYP
PAPDGLLDLLADLVVFEDDAPNLKRAKEIVALAELGGRKNVFDLLVRLGRFSPHENLPLL
KDGVARAFDHAALAAAAQVDLEPALEDKTRRDLTDMHVFTIDGAFTTDFDDALSFEPEPG
GGGVLGVHITDAGAVLAPDSPLDLEARGRGTSIYMPDDRIPMLPPSLSEDALSLRQDQLR
PAISTLARLDADGQVLDYEIVRSVIRVARRITYDEADYLLDSDPRLKGMHAICQALKAAR
GRAGAYFLPLPEVIVGVDELGQVYVRRIDREGASREMVAETAILANWLAARHLRDHEAPC
LYRRQSPPAEPFREGQPEDIYLHFSQRRLLNPADLTTKPGLHSSLGVDPYTQVTSPIRRY
FDLIVQRQLGAVLAGRGPVYAKSRLKELAQEVDATVRRAGRARNMRQRYWLLRWLEARKG
QELDALVMEPQMRRWSILLTDIMMLTSLPRGGGQPEFKPGQALRVVVEKADAFHEILRVR
LA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccccgtaggtcagctagtcgaattcattgataaaaacaggctatgcctggcc
tttgtgcagtcggccaaaaaaaccaagctcaacgtcctgaccagcgccgacaaggagctt
tccttgccccagggccgcgttttgctcatgaccgccggcggcggcctggccgggcgcaac
cgccaggccctggtcgagcgcctgcgcgaggtggaggtccgccgcgagggcctggcccaa
gacgtggacgtggccgggctgtgggagctggtggccgaggaggccgagccgctctcgctg
gccgacctggccggcctggcccacagcggcccgctggagggcgatcacctttcggccacg
ttgcgggcgttgttcaacgaacgctggcacttcaagatggccggcgaacagtttgttccc
ctttcggccgaacaactggagcaaaagcaactccagtcccagcgcgaggacgcccgccgc
gaacaggtcgacgcggccgtggattatctgcgcggcctggccgacaatggcccctatccg
ccggcgccggacggcctgctcgaccttttggccgatctggtggttttcgaagatgacgcg
cccaacctcaagcgggccaaggagatcgtggccctggccgagctgggcggccgcaagaac
gtctttgacctgctggtgcgcctgggccgcttttcgccccacgaaaacctgcccctgctc
aaagacggcgtggccagggcctttgatcacgccgcgctggccgccgccgcccaggtggac
ctggagccggccctggaggacaagacccgccgcgacctgacggacatgcacgttttcacc
atcgacggggccttcaccaccgatttcgacgacgccctttccttcgagcccgagccaggc
ggcggcggcgtgttgggcgtgcacatcaccgacgccggggccgtgctcgcgcccgattca
cccctggacctggaggccaggggccgcggcaccagcatctacatgccagacgaccgcatc
cccatgctgccgcccagcctcagcgaggacgccctgtccctgcgccaggaccaactgcgc
ccggccatcagcacgctggcgcgcctcgacgccgacggccaggtgctcgactacgaaatc
gtgcgcagcgtcattcgcgttgcccggcgcatcacctacgacgaggccgattatctgctc
gactccgacccgcgcctgaagggcatgcacgccatctgccaggccctcaaggccgcgcgc
ggccgggccggggcctattttctgcccctgcccgaggtcatcgtcggcgtcgacgaactg
ggccaggtctacgtgcggcgcatcgaccgcgagggggccagccgcgagatggtcgccgag
acggccatcctggccaactggctggcggccaggcatctgcgcgatcacgaagccccgtgc
ctctatcgccgccaatcgccgccggccgagccctttcgggaaggccagcccgaggacatc
tatctgcatttcagccagcgccgcctgctcaaccccgccgatctgaccaccaagcccggc
ctgcattccagcttgggcgtcgatccctacacccaggtcaccagccccatccgtcgctat
ttcgacttgatcgtccagcggcagttgggcgcggtgctggccgggcgcgggccggtctac
gccaaaagtcggctcaaggaactggcccaggaagtcgacgcgacggtgcggcgggccggc
cgggcgcgcaacatgcgtcagcgctattggctgctaaggtggctggaggcccgcaagggc
caggaactcgacgccctggtcatggagccgcagatgcgccgctggtcgatcctgctcacc
gacatcatgatgctcaccagcctgccgcgcggcggcggccaacccgaattcaaacccggc
caggcgctgagggtcgtggtcgaaaaggccgacgccttccacgagatcctgcgcgtgcgc
ctggcctga
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