Desulfarculus baarsii: Deba_1509
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Entry
Deba_1509 CDS
T01284
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dbr
Desulfarculus baarsii
Pathway
dbr03410
Base excision repair
dbr03430
Mismatch repair
dbr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Deba_1509
03430 Mismatch repair
Deba_1509
03440 Homologous recombination
Deba_1509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dbr03400
]
Deba_1509
DNA repair and recombination proteins [BR:
dbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Deba_1509
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Deba_1509
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Deba_1509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF5691
Motif
Other DBs
NCBI-ProteinID:
ADK84877
UniProt:
E1QH34
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All DBs
Position
1684325..1686046
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AA seq
573 aa
AA seq
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MIDTLPEKKWRVRNQSPSEAARLARELGLPPLAGQLLCNRGLVDAASARDFLRPRLADLP
GPDGFQGMGKAASLVAEAVQAGQVIGVAGDYDADGVTATALLVDFLRQCGGKVVWDLPHR
LSEGYGFLPPRAQRLAQAGARLVITVDCGVSDIDGVGAAKELGLTVIVTDHHQLPPGVAA
PADAMVNPQQDACALAKHLAGVGVAFYLAAACRAELRARGWFATRPAPNLRQSLDLVAVG
TCADVVPLVGHNRILVREGLLVLNQGGRRGLRALADASGARGPLDAKDLAFALAPRINAA
GRIDHPAQALELLLCQDEPQAAQRARLLDQLNQQRRAIEQEMLGQALEDVASEPRHQRAR
LLVLGRAGWHRGVLGIVASRVVEATGKPALLFAIENGTAVGSGRSVEGFHLQRALVGVKH
LLQHFGGHAQAAGMTTATANLPELWRQLDQAAQAALPPGEGAASLELETAAHVSQLGPGL
VDFLADLAPHGQANPEPLLLVEGATVLSASSVGRGHLRLLLGGAAAPLPAFWLGHGELAA
DIGGPLSLACQPRVSTYGGRHLELFIHDLRPGV
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacaccctgcccgaaaaaaaatggcgcgtgcgcaaccaatcgccgagcgaggcc
gcccggctggcccgtgagcttggcctgccgccgctggccggccagttgttgtgcaatcgt
ggtctggtggacgcggcgtccgcccgcgattttctgcggccgcgcctggccgatctgccc
gggccggatggctttcagggcatgggcaaggccgcgagcctggtggccgaggccgtgcaa
gctggccaagtgatcggcgtggccggtgattacgacgccgacggcgtgacggccacggcc
ctgctggtcgattttctgcgccaatgcggcggcaaggtggtctgggatctgccccaccgc
ctcagcgaaggctatggcttcttgccgcccagggcccaacgcctggcccaggccggggcg
cgcctggtgatcaccgtcgattgcggcgtctccgatatcgacggcgtcggcgcggccaag
gagttgggccttaccgtgatcgtcaccgatcaccaccaactgccgcccggcgtggccgcg
ccggccgacgccatggtcaacccccaacaagacgcctgcgccttggccaagcacctggcc
ggcgttggcgtggccttttacctggccgccgcctgccgggccgagctgcgggccaggggc
tggttcgccacgcgccccgcgccaaatctgcgccaaagcctggacttggtggccgtgggc
acctgcgccgacgtggtgccgctggtcggccacaaccgcattttggttcgcgagggcctg
ctggtgctgaatcagggcggccggcgaggtctgcgagccctggccgacgcctccggggcg
cgcggcccgctggacgccaaggatctggcctttgccttggccccgcgcatcaacgccgct
ggccggatcgatcatccggcccaggccctggagcttctgctctgccaagacgagccccag
gccgcccaacgggcccgcctgctcgatcagctcaaccaacagcgccgggccatcgagcag
gaaatgctcggccaggccctggaggacgtggccagcgagccacgccatcagcgggcgcgg
ttgttggtgttgggccgcgcgggttggcaccgtggggtgctgggcatcgtggccagccgg
gtggtggaggccaccggcaaaccggcgcttttgtttgccatcgaaaacggcacggccgtg
ggctcgggccgttcggtggagggctttcatctgcaaagggccttggtgggggtcaaacat
ttgctgcaacacttcggcggccacgctcaggccgccggcatgaccacggccacggccaat
ctgcccgagttgtggcgtcaactcgaccaggccgcccaggccgccctgccgcccggtgag
ggcgcggcgtcgctggagttggagacggccgcccacgtcagccagcttggcccgggcctg
gtggattttctggccgacttggctccccacggccaggccaaccccgaaccgctgcttttg
gtcgaaggggcgacggtgctgagcgcctccagcgtgggccgtgggcatctgcgcctgctg
ttgggcggggcggccgcgccgctgccggcgttctggcttggccacggcgaactggccgcc
gacattggcgggccgctcagcctggcctgccagccgcgcgtctcgacttacggcggcaga
catctggagcttttcattcacgatctgcggcccggcgtctga
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