Desulfarculus baarsii: Deba_2945
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Entry
Deba_2945 CDS
T01284
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dbr
Desulfarculus baarsii
Pathway
dbr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dbr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Deba_2945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dbr03021
]
Deba_2945
03400 DNA repair and recombination proteins [BR:
dbr03400
]
Deba_2945
Enzymes [BR:
dbr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Deba_2945
Transcription machinery [BR:
dbr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Deba_2945
DNA repair and recombination proteins [BR:
dbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Deba_2945
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
DUF5887
Motif
Other DBs
NCBI-ProteinID:
ADK86298
UniProt:
E1QKT9
LinkDB
All DBs
Position
complement(3245667..3249827)
Genome browser
AA seq
1386 aa
AA seq
DB search
MSQATETRTRVRKNFGKIAKIIDIPNLIDMQKQSYERFLQKDVAHAARRDVGLHAVFRSV
FPIRDFSGTSSLEYVSYDFGEVKYDEEECLARGMTFEAPLKLTVRLVVYDIDKETDVQSI
RDIKEQEIYFGTLPLMTDRGTFIVNGTERVVVSQLHRSPGIFFDHDRGRTHSSGKLLYSA
RIIPLRGSWIDLEFDPKDILYVRIDRRRKFPVTLLLKALGYSAQDLLDMMYVKDVFFIDG
EQVKRKIQPEIMMGREATMEIQDPEGEKPLVKLGKKITRRAIKRLEELGLDRIPVREEDL
LGRFAAVDFVDAGTGELICSLNQPITHEILLKLRAAGIDEVPTLFIDGQTRSSSFRDTLE
LDKVEDPDEAIIDIYRKLRPSNPPTLEVARTFFNNLFFSPEHYDLSAVGRLKVNLRLGLD
VAEELRTLRREDIMEAVRQLIDLKDAEGPADDIDHLGNRRVRAVGELLENQYRIGLVRME
RAIKERMSLQEIEALMPHDLINSKPVSAVVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHNTHYGRICPIETPEGPNIGLIVSLSTYARVNDYGFIETPYR
TAGDGRVHAETRFLSALEEADHPIAQANALLDDEGRFVNDLVSVRKEGEFMLLGPQEVHY
MDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPVLRTMAPLVGTGIEEVVARDS
GVCVVAAADGVINDVDASRIVVRYDKPLTAQAHSQVKIYKLIKFQRSNQNTCISQKPIVV
RGQRVVKGQILADGAAVDHGDLALGQNAMVAFMSWGGYNYEDSILISERIVKDDIFTSVH
IEEFETVARDTKLGKEEITRDIPNVGEEALANLDESGIVRIGAEIKAGDILVGKITPKGE
TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGIVIDAKVFSRKGIEKDERAQAIEDEE
VSSLLKDESDEVRIIHRNAMDDIEAFLKGRVLAKPLKNDMGRVLIEAKKELTAADLKGVT
LQQLRHLELAGVDEDVQSDFERIVDGYAEQIEMIRQAFENKIGKLRRGDELPPGVIKMVK
VYVAMKRKLAVGDKMAGRHGNKGVVSRILPVEDMPHFADGTPVDIVLNPLGVPSRMNVGQ
VLETHLGWACAGLGRRVGQLAEAVAAAREQMEKEARLAALKDYLTQIYSPEELAKISQSG
DEGLVRNALWLEDGLPIATPVFDGASEAEIRRLLELAGLPTTGQSVLIDGRTGEPFDRTV
TVGAMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAY
SLQEFLTVKSDDVAGRTRMYEKIVKGENHLEAGLPESFNVLVKELQALCLDVELVEQNRE
TPYVLE
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggcgaccgagaccaggacccgcgtccgcaaaaacttcggcaagatcgccaaa
atcatcgacatcccgaacctcatcgatatgcagaagcagagctacgagcgctttctgcaa
aaggacgtcgctcacgcggcgcgaagggatgtcggcctccacgccgtcttcagaagtgtt
tttcccattcgtgatttttccggtacttcgtccctggaatacgtttcttacgatttcggc
gaggtcaagtacgacgaagaggagtgcctggcccgcggcatgaccttcgaggcgccgctc
aagctcaccgtgcgcctggtggtctacgacattgacaaggaaaccgacgttcagtccatc
cgcgacatcaaggagcaggaaatctatttcggcaccttgcctctgatgaccgatcgcggc
acctttatcgtcaacggcaccgaacgcgtggtggtcagccagctccaccgcagcccgggc
atttttttcgatcatgaccgcggccgcacccattccagcggcaagctgctctattcggcg
cgcatcatccccctgcgcggctcgtggatcgacctggagttcgaccccaaggacatcctc
tacgtgcgcatcgaccggcggcgcaagttcccggtgaccctgctcctgaaggccctgggc
tactcggcccaggatctgctggacatgatgtacgtcaaggacgtctttttcatcgacggc
gaacaggtcaagcgcaagatccagcccgagatcatgatgggccgcgaggccaccatggag
atccaggatcccgagggcgaaaagcccctggtcaagctgggcaagaagatcacccgccgg
gccatcaaacgcctggaggaactgggcctggaccgcatccccgtgcgcgaggaagacctg
ctgggccgtttcgccgccgtcgatttcgtcgacgccggcacgggcgagctgatctgctcg
ctcaaccagcccatcacccacgagattttgctcaagctgcgcgccgccggcatcgacgag
gttccgaccctgttcatcgatggccagacccgttccagctccttccgcgacaccctcgaa
ctggacaaggtcgaagaccccgacgaggccatcatcgatatttaccgcaagctgcggccg
tccaacccgcccacgctggaggtggcccgcacgtttttcaacaacttgttcttttcgccc
gagcactacgacctctcggcggtgggccgcctgaaggtcaacctgcgcctgggcctggac
gtggccgaggaactgcgcaccctgcgccgtgaagacatcatggaggccgtgcgccagctc
atcgacctcaaggacgccgagggtccggccgacgacatcgaccacctgggcaaccgccgc
gtgcgcgcggtgggcgagctgttggaaaaccaataccgcatcggtttggtgcgcatggag
cgggcgatcaaggagcgcatgagcctccaggagatcgaggccctgatgccccacgacctg
atcaactccaagcccgtctcggcggtggtcaaggagtttttcggcaccagccagctcagc
cagttcatggaccagaccaaccctctctccgaggtcacccacaagcgccgcctgtcggcc
ctggggcccggcggtctgacccgcgagcgggccggcttcgaggtgcgcgacgtccacaac
acccactacggccgcatctgccccatcgagacgcccgaaggccccaacatcggcctgatc
gtcagcctcagcacctacgccagggtcaacgactacggcttcatcgagacgccctatcgc
accgccggcgacggcagggtccacgccgagaccaggttcctttcggccctggaagaggcc
gatcatcccatcgcccaggccaacgcgcttttggatgacgagggccggttcgtcaacgat
ctggtcagcgtgcgcaaggaaggcgagttcatgctgctggggccccaagaggtccactac
atggacgtttcgcccaaccagttggtctcggtggcggcgtctttggtgccgtttttggaa
aacgacgacgccaaccgcgccctgatgggctccaacatgcagcgccaggccgtgccggtg
ctgcgcaccatggccccgctggtgggcacgggcatcgaggaagtggtggcccgcgactcg
ggcgtgtgcgtggtcgccgccgccgacggcgtgatcaacgacgtcgacgccagccgcatc
gtggtgcgctacgacaaacccctgacggcccaggcccattcgcaggtcaagatctacaag
ctgatcaagttccagcgcagcaaccaaaacacctgcatcagccagaagcccatcgtcgtg
cgcggccagcgggtggtcaagggccagatcctggccgacggcgcggccgtggatcacggc
gacctggccttgggccagaacgccatggtcgccttcatgagctggggcggctacaactac
gaggactccatcctcatcagcgagcgcatcgtcaaggacgacatcttcacctcggtgcac
atcgaggagttcgagacggtggcccgcgacaccaagctgggcaaggaagagatcacccgc
gacatccccaacgtcggcgaggaggccctggccaacctggacgagagtggcatcgtgcgc
atcggcgccgagatcaaggccggcgacatcctggtgggcaagatcacccccaagggcgaa
acccagctcagccccgaggaaaagctgctgcgggccatttttggcgagaaggccggcgac
gtcaaggacacctccctgcgcgtgccgccgggcgtcgagggcatcgtcatcgacgccaag
gtcttcagccgcaagggcatcgaaaaagacgagcgcgcccaggccatcgaggacgaggag
gtctccagcctgctcaaggacgagtccgacgaggtgcgcatcatccatcgcaacgccatg
gacgacatcgaggccttcctcaagggccgcgtgctggccaagcccctgaaaaacgacatg
ggccgcgtgctcatcgaggccaagaaggagctgaccgccgccgacctcaagggcgtcacc
ctccagcagttgcgtcacctggagttggccggcgtcgacgaggacgtgcaaagcgacttc
gagcgcatcgttgacggctacgccgagcagatcgagatgatccgccaggccttcgagaac
aagatcggcaagctgcgccgcggcgatgaactgccgccgggcgtgatcaaaatggtcaag
gtatacgtggccatgaagcgcaagctggccgtgggcgacaagatggccggccgccacggc
aacaagggcgtggtcagccgcatcctgcccgtggaggacatgccccacttcgccgacggc
acgccggtggacatcgtgctcaaccccctgggcgtgcccagccgcatgaacgtgggccag
gtgctggagacgcaccttggctgggcctgcgccggcctgggccgacgcgtgggtcaactg
gccgaggccgtggccgccgccagggaacagatggaaaaagaggcccgcttggccgcgctc
aaggactatctgacccagatttactcgcccgaggaactggccaagatatcgcaaagcggc
gacgagggcctggtgcgcaacgccctgtggctcgaggacggcctgcccatcgccaccccg
gtcttcgacggcgcctccgaggccgaaatccgccgcctgctggagctggcgggcctgccc
accaccggccagtcggtgctgatcgacggccgcaccggcgaacccttcgaccgcacggtc
acggtgggggccatgtacatgctaaagctgcaccacctggtcgacgacaagattcacgcc
cgcagcatcgggccctactcgctggtcacccagcagcccctgggcggcaaggcccagttc
ggcggccagcgcctgggcgagatggaggtctgggccatggaagcctatggcgcggcctac
tcgttgcaagagttcctcaccgtcaagagcgacgacgtggccggacgcaccaggatgtac
gaaaagatcgtcaagggcgaaaaccacctcgaggccggcctgcccgagagcttcaacgtg
ttggtcaaggagttgcaagccctttgcctggacgtggagttggtggagcaaaacagggag
accccctacgtgctggagtaa
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