Desulfotomaculum nigrificans: Desca_0205
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Entry
Desca_0205 CDS
T01498
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desca_0205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dca03021
]
Desca_0205
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_0205
Enzymes [BR:
dca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desca_0205
Transcription machinery [BR:
dca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desca_0205
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desca_0205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AEF93109
UniProt:
F6B5N6
LinkDB
All DBs
Position
224406..227918
Genome browser
AA seq
1170 aa
AA seq
DB search
MLELNNFDSIRIGLASPDKIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVIEPGDTPLLKKQLLTETEYREYKDKFGNSFKAAMGAEAIKKLLE
EIDLDELARELRQELKDVSGQRKIRAIRRLEVVEAFRKSGNRPEWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKE
MALELFKPFVMKKLVNDGYAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAANNIL
NPKDGKPVASPTQDMVLGCYYLTIERDGDLGEGSVFKDEDEAILAYYNKAVSLHAKVQVR
INGKRIDTTVGRVIFNQVIPKELGYINTVCDKKQLSKIVNDCYRKLGNASTAELLDGIKE
LGYRFSTQAGITIGVADITIPKEKKEILAQADEQVNKIETQFRRGLITEDERYRKVIAVW
NDATDKVTKALMGALDKFNNVYMMATSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIKA
NFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTTEGIE
VTEVRDGTETIEKLADRLDGRVPMEPVVHPETGEVIISQEQVDRREMISSEQAQAIMDAG
IKKVKIRSVITCKTRYGVCKHCYGRNLATGGPVDIGEAVGIIAAQSIGEPGTQLTMRTFH
TGGVAGDDITQGLPRVEELFEARRPKGQAIVAEEDGVVAIREVKGRREIEITKDNGEKNV
YSVPYGARLKVNDGDRVEAGDELTEGSVNPHDLLKIKGPAGVQIYLLQEVQRVYRLQGVE
INDKHIEVMIRQMLRKVKVEDAGDTDLLPGALHDVFEFEEENRKVIERGGQPAVAKPVLL
GITKASLATDSFLSAASFQETTRVLTEAAIKGKLDPLVGLKENVIIGKLVPAGTGMSRYR
NIEVVTEDQAKQEDDSDILLPTGEGQYDLK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ttgttagaattaaacaattttgacagtatccgtatcggcttggcttcaccggacaaaatc
cggcagtggtccagtggagaggtaaagaaaccagaaactattaactaccgaacattaaag
ccggaacgggacggactgttctgtgagcgaatttttggtcccaccagggactgggaatgt
cattgcggaaaatacaaacgtgtacgttataaaggtgttgtttgtgaccgttgcggcgta
gaagtaaccagatccaaggtccgccgggagaggctgggccatattgaattggctgctccc
gtatctcacatttggtattttaagggtattcccagccgcatgggtttgttgctggatatg
tctccgcgggccctggaaaaggtattatactttgtatcctatattgtcatagaacccggt
gataccccgctgctgaaaaaacaactgctgaccgaaaccgagtaccgggagtacaaggat
aagttcggtaactcctttaaggctgccatgggtgccgaagccattaaaaaattactggaa
gaaattgatctggatgaattggccagggaactccgccaggagttaaaggatgtttccggc
cagcggaaaattcgggccattcgccggttagaagtggtggaagcattcaggaaatcaggc
aaccgcccggaatggatgattttagatgtggtgccggttatcccgccggaactaagaccg
atggtacaactggacggcggacgttttgctacctctgatttgaatgacctgtaccgccgg
gtaattaaccgtaataaccgtttaaagcgcttattagatctaggagccccggatattatt
gtacgtaacgaaaaacgtatgctccaggaagcggtggatgccttaattgataacggccgc
cgtggtcgaccggtaaccggccctggcaaccggccgttaaaatccctgtcagacatgctt
aaaggtaagcaaggacgtttccgccaaaacctgctgggtaagcgggtggattactccggt
cgttccgttatcgtggttgggcctaagctcaaaatgcaccagtgtggtttgcccaaggaa
atggccctggaactgttcaaaccctttgtgatgaagaaactggtcaacgacgggtatgcc
cacaacattaaaagtgccaagcggatggtagaaagggtgcggcccgaggtctgggatgtt
ttggaggaagtgattaaagaacacccggttctgttaaaccgtgccccaaccctgcaccgt
ttgggcattcaagcctttgagccggtattggtggaaggccgggctattaaaattcacccg
atggtatgtacagcttacaatgctgacttcgacggggaccaaatggctgtacacgttccc
ctttcggccgaggctcaggccgaagccaggctattaatgctggccgccaataacatcctg
aaccccaaagacggtaaaccggtggccagtcccacccaggacatggttttgggatgttac
tatctgaccatcgaaagagatggtgacctgggcgaaggtagtgtctttaaagatgaagat
gaagctatcctggcctactacaataaagcagtttccctgcatgccaaggtacaagtccga
attaacggcaaaagaatagataccacggtgggtcgggttatctttaaccaggttattccc
aaggaactgggatatatcaacacagtttgtgataaaaaacaacttagtaaaattgttaac
gactgctatcgtaaactaggcaacgccagtaccgctgaattactggatgggattaaagaa
ttaggttatcggttctctacccaggccggtattaccattggtgtggccgatattaccatt
cctaaagaaaagaaagaaattctggcgcaggccgatgagcaggttaataagattgagacc
caattccggcgcggtctgatcaccgaggatgagcgttaccgcaaggtgatcgcggtttgg
aatgatgctacagataaagttaccaaggccctaatgggcgccctggataaatttaacaac
gtgtacatgatggccacctccggtgcccgtggtaacattcagcagattcgtcagctggcc
ggtatgcggggcctgatggctgacccctccggtaggatcatcgaccttcccattaaagct
aacttccgggaaggcctcaccgtattggagtacttcatttccacccacggtgcccgcaaa
ggtttggctgataccgccttgcgtaccgctgactccggttacctgacccgccgcctggtg
gatgtagcacaggatgtaattgtcagagaagaagactgtggtaccaccgaaggtattgag
gttactgaagttagagacggtaccgaaaccattgaaaaattagccgaccgtttggatggc
cgggtacccatggaaccggtggtacacccggaaaccggggaagtaattatctctcaggag
caggttgatcgccgcgagatgatcagctccgaacaggcccaggccatcatggatgccggt
attaaaaaggttaagattcgttccgtaattacctgcaaaacccgttatggtgtatgcaaa
cactgttacggacggaacctggccaccggcggaccggtggacattggtgaggctgtaggt
attattgcggcccagtccattggtgagcctggtacccagttaaccatgcgtaccttccac
accggtggggtggccggtgatgatattacccagggtctaccgcgggtggaagaacttttt
gaagcccggagacccaaaggtcaggccattgtggctgaggaagacggggttgtagcaatc
agagaagttaaaggtcgccgagaaattgagataaccaaagacaatggtgaaaagaatgtg
tactcggttccttatggtgccagactcaaggttaatgacggggatcgagtggaagctggc
gatgagctgaccgagggctcggttaatccccacgacttgttgaaaattaaaggtcctgcc
ggtgtacaaatctacctgctgcaagaggtgcaaagggtatatcgcctgcagggtgtagaa
attaacgacaagcacattgaggtcatgattcgccagatgctgcgcaaagtgaaggtagaa
gatgccggagacactgatttgctgccgggtgctctgcatgacgtctttgaatttgaagaa
gaaaatcgcaaagttatagagcgaggcggccaaccggcggtagcgaaaccggtgctgctg
ggtattactaaggcctccctggccactgactccttcttgtccgcggcctcattccaagag
accaccagggtgctgaccgaagcagccatcaagggtaaacttgacccgctggtgggtcta
aaggaaaacgtcatcatcggtaaattggtaccggccggcacaggaatgtcccggtaccgg
aatatcgaggtagtaactgaagaccaggcaaaacaagaagatgattccgacattctgttg
cccaccggtgaaggacaatacgatctaaagtag
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integrated database retrieval system
