Desulfotomaculum nigrificans: Desca_0240
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Entry
Desca_0240 CDS
T01498
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desca_0240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dca03021
]
Desca_0240
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_0240
Enzymes [BR:
dca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desca_0240
Transcription machinery [BR:
dca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desca_0240
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desca_0240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
RAD51D_N
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
AEF93144
UniProt:
F6B5S1
LinkDB
All DBs
Position
246402..247349
Genome browser
AA seq
315 aa
AA seq
DB search
MLEIEKPKIEIVEQSEDNTYGKFVVEPLERGYGITLGNSLRRILLSSLPGAAVTSVKIEG
VLHEFSTVPGVREDVTDIILNLKNLCLKIHSDEEKVLRIEADTEGPVTAGDIIHDADVEI
LNPDLHLATLDAGGRLYMEITANKGRGYVSAEKNKKGEHIIGVIPVDSIYTPVRKVNYNV
ENTRVGQITDYDKLTLEVWTNGSIRPDEATSLSAKILSEHLRLFIGLTETVNDVEIMVEK
EEEQKDKIMEMTIEELDLSVRSYNCLKRAGINTVEELIQRNEEDMMKVRNLGKKSLEEVM
NKLAELGLSLRKDDE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
ttgttggagattgagaagccaaagattgagattgtggaacagagcgaggataatacttac
ggtaaatttgtggtagagccgttggagcgaggctacgggattaccctgggcaactcactc
cgccggattctactatcctccctacccggggctgctgtaacctcagttaagattgaaggc
gtgttgcacgagttcagcactgttcccggcgttagggaagatgttaccgatattatccta
aacctgaaaaatctttgtcttaagatacacagcgacgaggagaaagttctgcggatcgaa
gcggacaccgaaggtcccgtcactgccggtgatattattcatgatgctgatgtggagata
ctgaaccctgatttacacttggcaacccttgatgccggtggccgtctgtatatggaaatc
accgccaataaagggcgtggttatgtttccgccgagaaaaataaaaagggtgagcatatc
atcggggttatacccgtagactccatttacacaccggtacgtaaggtgaactacaacgtg
gagaatacccgtgtaggacaaattactgattacgacaagctcactctggaggtctggacc
aacggcagtatccgaccggacgaggctaccagcctgtctgccaaaattttaagcgagcat
ttaagactgttcatcgggttaactgaaaccgttaacgatgttgaaattatggtagagaag
gaagaggaacaaaaggacaagatcatggaaatgaccattgaggaacttgatctgtccgta
cgctcctacaactgcctgaaacgggctggtatcaatacagttgaagaactgattcagcgt
aacgaggaagacatgatgaaggtacgcaacctcggtaagaagtcgctggaagaagttatg
aataaactggccgaactgggcctgtcgctgagaaaagacgacgagtaa
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