Desulfotomaculum nigrificans: Desca_0481
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Entry
Desca_0481 CDS
T01498
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desca_0481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dca03019
]
Desca_0481
03110 Chaperones and folding catalysts [BR:
dca03110
]
Desca_0481
03029 Mitochondrial biogenesis [BR:
dca03029
]
Desca_0481
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dca04147
]
Desca_0481
Enzymes [BR:
dca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Desca_0481
Messenger RNA biogenesis [BR:
dca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Desca_0481
Chaperones and folding catalysts [BR:
dca03110
]
Heat shock proteins
HSP60 / Chaperonin
Desca_0481
Mitochondrial biogenesis [BR:
dca03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Desca_0481
Exosome [BR:
dca04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Desca_0481
Exosomal proteins of other body fluids (saliva and urine)
Desca_0481
Exosomal proteins of breast cancer cells
Desca_0481
Exosomal proteins of colorectal cancer cells
Desca_0481
Exosomal proteins of bladder cancer cells
Desca_0481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
UPF0181
CbiA
EAD9
SurA_N
Motif
Other DBs
NCBI-ProteinID:
AEF93374
UniProt:
F6B7C4
LinkDB
All DBs
Position
501122..502744
Genome browser
AA seq
540 aa
AA seq
DB search
MAAKEIIFSEDARKALERGVNALAEAVKVTLGPKGRNVVIDKKFGAPTITNDGVTIAREI
ELPDHFENMGAQLVKEVATKTNDVAGDGTTTATVLAQALVREGLKNVAAGANPMIIKRGI
EKAVEKAVEEIKAMAKTIESKEAIAQVATISANDESIGNLIAEAMEKVGKDGVITVEESQ
GIGTTLEVVEGMNFDRGYISPYMITDTDKMEASLSDPYILITDKKISSVQDILPVLEKVV
QTGNKPVLLICEDLEGEALATLVLNKLRGTLNVVAVKAPGFGDRRKAMLEDIAILTGGTV
ITEEVGLKLDKATLDMMGTARQVRVKKEETIIVGGAGEQSKIEARIAQIKKQIEETTSDF
DREKLQERLAKLAGGVAVIQVGAATEVEMKEKKLRIDDALNATRAAVEEGIVPGGGTAYV
DIIAALDSIKLEGDAKTGVEIVKKALEEPLRQIANNAGLEGSVVVEKVKATEKGIGFNAV
TEQYVDMIAAGIVDPAKVTRSALQNAASIAAMILTTETLVSEKPEKEAAPNPMAGMGGMM
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctaaagaaattatttttagcgaagatgcccgtaaagctctggaaagaggcgtt
aacgccctggccgaagctgttaaggtaacccttggccccaaaggccgtaatgttgtaata
gataagaagtttggggctcccaccatcaccaatgatggtgtaaccatcgcccgggaaatt
gagctgcctgatcatttcgagaacatgggtgctcaattggttaaagaagttgctaccaag
accaacgatgtggccggtgacggtaccaccactgctaccgttttagcccaggctctggtt
cgcgaaggcctgaaaaacgttgctgctggcgctaaccccatgattatcaagcgcggtatt
gaaaaggctgtagaaaaggctgtagaagaaattaaagccatggctaagaccattgagagc
aaagaggccatcgctcaggtagctaccatctctgccaacgatgaatccatcggtaactta
attgccgaagccatggaaaaagtaggtaaagatggcgttatcaccgttgaagagtctcaa
ggtatcggcaccactctggaagttgttgaaggtatgaacttcgaccggggttacatatcc
ccctacatgattaccgataccgataagatggaggcttccttaagcgatccctacatctta
atcaccgataagaaaatctcttccgttcaggatattctgcctgttctggagaaagttgtg
caaaccggcaacaagcctgtactattgatctgcgaggacctggaaggcgaagcactggct
accctggtactgaacaaactgcgtggtaccctgaatgtagttgctgttaaggctcctggc
tttggcgatcgccgcaaggctatgctggaagacatcgctatcttaaccggtggtactgtt
atcaccgaagaagttggcctcaaactggataaagctaccctggatatgatgggtactgcc
cgtcaggttcgggttaagaaagaagagaccatcatagttggtggtgctggcgaacagtct
aagattgaagcccgtattgctcaaattaagaaacaaatcgaagaaaccacctctgacttt
gaccgtgagaaattacaagaacgtctggccaagctggctggcggcgtagctgtaattcaa
gttggtgcagccaccgaagttgaaatgaaagagaagaaactgcgcattgacgatgctctg
aacgctacccgtgccgcagttgaagaaggtattgtacctggtggcggtaccgcttatgtt
gatatcattgccgctctggatagcattaagctggaaggcgatgctaagaccggtgtggaa
attgtgaagaaagctctggaagaacccctgcgtcaaatcgctaacaacgctggtttagaa
ggttctgtagtggttgaaaaggttaaagccacagaaaagggtattggtttcaacgctgtt
accgagcaatatgttgatatgattgctgccggtattgttgacccggctaaagtaacccgt
tctgctctgcaaaacgctgcttccatcgctgctatgatcctgaccactgaaactctggtt
tccgaaaaacctgaaaaagaagcagctcctaaccccatggccgggatgggcggcatgatg
taa
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