Desulfotomaculum nigrificans: Desca_0627
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Entry
Desca_0627 CDS
T01498
Name
(GenBank) superfamily I DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03420
Nucleotide excision repair
dca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desca_0627
03430 Mismatch repair
Desca_0627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_0627
Enzymes [BR:
dca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desca_0627
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desca_0627
MMR (mismatch excision repair)
Other MMR factors
Desca_0627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
UvrD_C
UvrD_C_2
SLFN-g3_helicase
AAA_22
AAA_16
DEAD
AAA_12
NACHT
nSTAND3
AAA_30
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AEF93516
UniProt:
F6B871
LinkDB
All DBs
Position
683478..685907
Genome browser
AA seq
809 aa
AA seq
DB search
MSLNKKTNENPINHPDYPIEKQRLEKTIKAMKEVIDSLELSAQNAKQKARGLMRNQDKIS
ANDAQVARFLASSKMSESSKLRDAVKKPYFGRIDYREDGSQIIETFYIGDVRFDGPSDLQ
VIDWRAPISSVFYETQGGRATYKANGKLYSGDVSLKRQYTIENGVLRKIIDSHIPNGLTQ
KPPVITPTPQNRQQVQEKKGKQRNTYFDEPILMERLQQGVDKKLKGIVETIQAEQNQVIR
EDLEQVIIVQGAAGSGKSTVALHRISYLLYNYPTLKASDIVVIAPNKLFLDYISEVLPGL
DAKGVKQITFQDLITIVTGVQYTLHKDEKMEMFLEGKPGYLHTVIRNLLIECSKLKGSLT
FMEALEGFIKEKTNTFTRKLQDINLYEGKLKISREEQVFKFQSDSSPYNQRLENLKSYIK
FKIDQFLNVADNPMGQSVKAKGGKISSKGYIQRIKESYEHEMYYGNEINRLDPNERARRR
AELEKEQKQKLTQIEKEKTSFLNTYFNDWTTLSVRKAYQEFLQEDWIHKLLPPNEHQTAL
FMAQYTKEVLESGKVEKEDLAPLGYLKYLIDGFEEHVKFRHIVVDEAQDLSPFEFKLLSM
LSQNQSFTILGDLSQGISYKGFTNWEYLLKGIFQGITYKYFKLKYRYRSTKEIVQLSNKV
IPKGLPRGLPIERSGDQPKIERMDSAQAMLRRIIELIRFYKNKSYRSIGVIAKRDSECQR
IAKIMNRDYPEIKCNLILPDTTTYEGGVSIVPITLAKGLEFDAVIIVNASDKNFKDNTFD
AKLLYIALSRALHHLHVLYMDTITPLLAN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgagtctgaacaagaaaacaaatgaaaatccaattaatcaccctgactatcctattgaa
aaacaacggttggaaaaaacaataaaagcaatgaaagaggtaattgattccttagaactc
tcagcacaaaacgctaagcagaaagcacgggggttaatgaggaatcaggacaaaattagt
gccaatgatgcccaggtagcacgatttttagcctccagtaaaatgagtgagagttctaaa
ctaagagatgccgttaaaaaaccatactttgggcggattgattaccgggaagatgggagt
caaataattgaaaccttttatattggcgatgtacgattcgatggtccctcagacttacaa
gttattgattggcgtgccccaatttcgtcagtattttacgaaacacaggggggcagggct
acttataaagcaaatggaaaactttattccggtgatgtaagcctaaagagacaatatact
atagaaaatggcgtactgcgaaaaatcatagatagccatatacctaacggattgactcaa
aaaccccctgtcataacccctacaccacaaaatagacaacaagtacaagagaagaaggga
aaacagcgaaatacgtattttgacgaaccgattttaatggagcggcttcaacagggagtc
gataaaaagcttaagggtattgtagaaacaatccaagccgagcaaaatcaggttatccga
gaagatctagagcaagtcataattgttcaaggagcagctggatcgggaaaaagtacagtt
gccttgcacaggatttcataccttctctataattacccaactctaaaagccagtgacatt
gtggtcattgctcccaacaaattatttctggattatatttcagaagtattgccaggattg
gatgctaagggagtaaaacaaataacttttcaagacttaattactatcgtcacaggtgta
caatatacgcttcataaagatgaaaagatggaaatgtttctagaaggaaaaccggggtat
ttacatactgttatccgaaatttacttatagagtgttcaaaactaaaaggttcattaaca
tttatggaagcactggagggctttattaaagaaaaaacaaataccttcactagaaaactt
caagatataaatctttacgaggggaaattaaagattagccgggaagaacaagtatttaaa
tttcaaagtgacagtagcccctataatcagcgattggaaaacctgaagagttacatcaaa
tttaaaatagatcaatttctcaatgttgcagataatcctatgggccaatctgttaaagca
aaaggcggaaaaatatcatccaaaggatatattcaacggataaaagaatcatatgaacat
gaaatgtattatggcaacgagattaaccggctagatccaaacgaaagagctagaagaaga
gcagaactggaaaaagaacaaaagcaaaaactaacccaaattgaaaaagaaaagacaagt
tttctgaatacctattttaatgattggacaaccttatccgtgcgtaaagcctaccaggaa
tttttacaagaagactggatacataaactgttgccaccgaatgaacatcaaactgcctta
tttatggcccaatataccaaagaagtattagaaagtggcaaggtagagaaagaagactta
gcccctttaggttacctcaaatatctcatagatggttttgaagaacacgtcaaatttaga
catatcgttgtggacgaagcacaggatttaagtccctttgaatttaaattactcagcatg
ttatctcaaaatcaatcctttacaattttgggagatctgtctcagggtatctcttataaa
ggtttcacaaattgggaatacctattaaaagggatttttcaaggaattacctataaatat
ttcaaactaaaatatcgctacagatccacaaaagaaattgttcaattatctaataaggta
attccgaaaggattacccagaggattgccaatagagcggagtggagaccaacccaaaata
gaaagaatggactctgcccaggcaatgctccggcgcattatagaacttataagattttat
aaaaacaaaagttatcggtccattggagtaatcgctaaaagagatagcgaatgccagcga
attgccaaaattatgaatagggattaccccgagataaagtgcaatcttattttaccggat
actaccacctacgaaggaggcgtatctatcgtacccattacccttgctaagggtctggag
tttgatgcggtcattatagttaatgcctcagataaaaactttaaggacaacacctttgat
gccaagttattgtacatagccttatccagagccctccatcacttacatgtattatatatg
gacaccataacgcctctgttagctaattaa
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