Desulfotomaculum nigrificans: Desca_1454
Help
Entry
Desca_1454 CDS
T01498
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desca_1454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dca03019
]
Desca_1454
03009 Ribosome biogenesis [BR:
dca03009
]
Desca_1454
Enzymes [BR:
dca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desca_1454
Messenger RNA biogenesis [BR:
dca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desca_1454
Ribosome biogenesis [BR:
dca03009
]
Prokaryotic type
rRNA helicases
Desca_1454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Utp25_C
AAA_30
CobA_CobO_BtuR
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AEF94309
UniProt:
F6B5Z0
LinkDB
All DBs
Position
complement(1581104..1582702)
Genome browser
AA seq
532 aa
AA seq
DB search
MNQERVTKFFGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTA
AFGIPLVARLNFRKRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQI
RSLRQGVHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPP
ERQTLLFSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYEAPEKHKLEALCRI
LDTTEITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELL
VATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRL
IENLTKTRIKRGRLPSIADVAERQREGIKDRLVQIIEEGKLAYYRSVVDPLTDEYDPIDI
AAAALKISLDLEPAGEDIDLDTVNFGDTGARPGMVRLFLTLGRKDQTSPAEIVKLFSEES
GIPGNKIGSINIYENFSFVEVPEDWANCVISCLHRQNFKGRRLFVEPARARK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaagggtaacaaagttctttggcaaccttgaattagactcgtgtattgta
caagggttagtggatatggggtttgaggaaccaacccccattcaacaacttgctgttcct
ctggtgctggccgggcatgatattattggccaggcccagacaggaaccgggaaaacggct
gcctttggtatccccctggtggcccggctaaattttcgtaagcggggtgtacaggccatt
ataattacccccaccagggagttagctattcaagtaggggaagagattaacaagattggt
cgctaccggagagctagagtattgcccatttatggaggccaatccattgaacgacaaatt
cgttcactgcgtcaaggggtccatgttgtggtgggtactcccggtcggctgttggaccat
ttaagacgtcagacattaaaacttgatcaggttagcatggtggttttggacgaggcagat
gaaatgttggatatggggttcattgatgacatcgaagaaatccttcgtcatacaccacca
gaacggcaaactctacttttttctgccactatgcccgaggaaattagcaggttagcccgc
cagtatatgactgaccctaaatttgtcactgtcagcaaggccaacataactgcacctagt
attgaacagatttattacgaagcgccggaaaaacataaactagaagcattgtgcagaatt
cttgacaccacagagattacccaggggatagttttttgtcgtaccaaacgcggcgtggat
gaactggtggctggcctacaagccaggggttatactgctgtatcattacatggggatcta
agccaacagcaacgaaatactgttatgagacaatttcgttcgggggaggtagaattactg
gtggccaccgatgtggcagccagaggcctggatatagagggtgtttcccacgtaattaac
tatgatatcccccaggatcccgaattttatgtgcatcgtattggtcgcaccggtcgcgcg
ggacgatccggggtggctataaccattattactccgcgggaataccggcaactcagacta
attgaaaacctaaccaaaaccagaatcaagcggggtcggttgcctagtattgctgatgtc
gctgagcggcaacgagaaggaattaaggatagactggtgcaaattattgaagagggtaag
ttggcatattatcgatctgttgtagatcctttaacagacgaatatgatcccattgatatt
gccgctgctgcccttaaaatatctttagatttagaaccagcgggtgaagacatcgacctg
gatacggtaaattttggtgataccggggctaggccaggtatggttaggttgtttctgacc
ctgggacggaaagatcaaacctctccggccgagattgttaagttgttctcggaggaatcg
ggcattccgggtaacaagattggcagtattaacatttacgagaattttagttttgttgag
gtaccggaagattgggccaactgtgtcatcagctgcttacaccgccaaaattttaaaggc
cggagattgtttgtggaaccagcacgggccagaaagtaa
DBGET
integrated database retrieval system
