Desulfotomaculum nigrificans: Desca_1485
Help
Entry
Desca_1485 CDS
T01498
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desca_1485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dca03019
]
Desca_1485
03016 Transfer RNA biogenesis [BR:
dca03016
]
Desca_1485
Enzymes [BR:
dca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Desca_1485
Messenger RNA biogenesis [BR:
dca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Desca_1485
Transfer RNA biogenesis [BR:
dca03016
]
Prokaryotic type
tRNA degradation factors
Desca_1485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AEF94340
UniProt:
F6B621
LinkDB
All DBs
Position
complement(1608944..1611160)
Genome browser
AA seq
738 aa
AA seq
DB search
MSENPVLIREMTLGGRKLTLETGRLAKQASGAVLVTYGDTMVLVTATVAKNTRDIDFFPL
TVDYEERLYAVGKIPGGFIKREGRPSEKAILSGRLIDRPIRPLFPKHMRNEVQVVATVLS
VDQDNAPEIAAMIGASAALHISKIPLKKPIGGVIVGRVDGQFVINPVVQQAENSDMHLVV
AGTDDAVMMVEAGAKEVPEDQILEAIMFGHEVVKEVVKFIDDFRVAALELGLAQEKMVIP
EPEYDPAIVEVVLPKAEEVIREAVLYCSREKLTKKDREAYMEEVMTNLQTSFLEQFPENE
KDIMDLIEKAEKKVVRRIITHDKLRIDGRAIDEVRPISVEVGVLARTHGSGLFTRGQTQI
LTVATLGCVSDEQILDGLGLEETKRYMHHYNFPPFSTGETKPMRSPGRREIGHGALAERA
LEPMIPPEEVFPYTLRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVAGVAMGLIM
EEDQFTVLTDIQGLEDHLGDMDFKVAGTANGITALQMDIKIPGITREVFEQALAQAYRGR
MHILSKMLEVIPAPRPEISPYAPSIIRTTIHPDKIRDVIGPGGKIIKKLVEETGADIDIE
DDGRVFIAAVDREKGKRALEIIQSITSEVEVGKLYKGKVTRVTDFGCFVEVIPGVLGLPG
KEGLVHISQLDFQRVEKTEDVVKEGDVITVKAIGYDHQGRLKLSRKEALRDMGIAPGEDL
SAERKERRQYNRPRVAKQ
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaatccagtattaattagggagatgaccctagggggtagaaaacttaccctg
gaaacaggtcgcttggctaaacaggctagtggcgcagtattggtaacatatggagacacc
atggttttggtgaccgccaccgtggctaagaataccagggatattgatttctttcccctt
accgtagattatgaggaaaggctatatgctgttgggaaaattcccggcggttttattaaa
agggaaggacggcccagtgaaaaggccatattatcaggtagattaattgaccgccccatt
cggccgttgtttcccaaacatatgagaaatgaagttcaagtagtggctacggttttatcc
gtagaccaggacaacgcgccggagattgcagctatgattggggcttccgctgctttacat
atttctaaaatacccctgaagaagcccattggtggcgttattgtgggccgggtagatggt
cagtttgtcattaacccggtggtgcagcaagctgaaaacagtgatatgcacctggtggta
gctggtactgatgatgctgtgatgatggttgaggcaggtgctaaagaggtacccgaagac
cagatcctggaggccattatgtttggccacgaggtagtcaaagaagttgttaaatttatt
gatgatttccgggttgctgcgctggaattaggtttagcccaggaaaaaatggttattccc
gagccggaatatgatcctgctatagttgaggttgtactgccgaaggcggaggaggtaatc
cgtgaggcagttctctattgttccagagaaaaactcactaaaaaggatcgggaggcctac
atggaagaggttatgactaatttacaaacctctttcttggaacaattcccggaaaatgaa
aaagacatcatggacctgattgaaaaggcagagaagaaggtagtgcggcgtatcattacc
catgataaattgcgtattgacggtcgggccattgatgaagtacgaccaatttccgttgag
gtaggtgtcttggcccgcactcacgggtcgggattgttcaccaggggacaaactcaaatt
ttaaccgtagctaccctgggttgtgtcagtgatgaacaaattcttgatggtcttggtctg
gaagagactaaacgttatatgcatcattataactttccaccttttagtaccggtgaaact
aagcctatgagatccccgggacgtagggaaataggtcacggtgctctggctgaacgggcc
ctggagcctatgattcctccagaggaagtttttccctatactctcagagtggtttccgaa
gctctggagtcaaacggttcaacttccatgggcagtgtatgcggtagtaccctggctttg
atggatgctggtgttcccataaaggctccagtggctggtgtggccatgggcttaataatg
gaagaagaccagtttactgtattgactgatattcaaggattagaggatcatttaggcgat
atggactttaaggtcgccgggaccgccaatggtattactgctttacaaatggatattaag
attcctggtattacaagagaagtatttgaacaggccttggcccaggcttaccggggtcgt
atgcacatcctgagtaagatgttagaagtaattcccgctcccagaccggaaatttctcct
tatgcacccagtatcattagaaccaccatacatccggataaaattcgcgatgtcattgga
ccaggtggcaagatcattaaaaaattggttgaggaaaccggggccgatattgatattgag
gatgatggcagggtgttcattgccgccgttgaccgggaaaaaggtaaacgggccttggaa
attatccaatccattacctccgaagttgaagttggtaaactatataaaggtaaagtaact
cgggttactgattttggttgtttcgtggaggttattcccggagtattggggctgccgggc
aaagaggggttggttcacatttcccaactggacttccaacgggttgaaaagaccgaagat
gtggttaaagaaggggatgtcatcacagttaaagctatcggctatgatcaccaaggccgg
ttaaaactgtcccgtaaagaagctttaagggatatgggtatagccccgggagaggatcta
tctgccgaacgcaaggagcggagacaatataatcgtccaagagtagctaaacaataa
DBGET
integrated database retrieval system
