Desulfotomaculum nigrificans: Desca_1520
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Entry
Desca_1520 CDS
T01498
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dca
Desulfotomaculum nigrificans
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dca03032
]
Desca_1520
03400 DNA repair and recombination proteins [BR:
dca03400
]
Desca_1520
Enzymes [BR:
dca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Desca_1520
DNA replication proteins [BR:
dca03032
]
Prokaryotic type
DNA Topoisomerases
Desca_1520
DNA repair and recombination proteins [BR:
dca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Desca_1520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Zn_ribbon_GRF
HVO_2753_ZBP
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
AEF94375
UniProt:
F6B6K1
LinkDB
All DBs
Position
complement(1645228..1647369)
Genome browser
AA seq
713 aa
AA seq
DB search
MGCTNLSKTLVIVESPAKAKSIGKYLGRNYTVKASMGHLRDLPKSQFGVDVESNFSPKYI
AIRGKGEIIKELRAAVKKADRILLASDPDREGEAIAWHLSKLLDIDENSNCRIEFNEITK
QAIQQAVKHPRPIDIDRVNAQQARRILDRLVGYNLSPLLWRKVKKGLSAGRVQSVAVRLI
VDREEEIKAFIPEEYWSLTAKFSKTAKSTFEAKLYKYQNKKITIPNQEAMDKILADLKGV
SYVVASVTRKEKLRNPAPPFTTSSLQQEASRKLNFTARKTMAVAQQLYEGLELGKEGPVG
LVTYIRTDSTRVSETAVEEAKKFILERFGPAYVPKESRQTVAKGKVQDAHEAIRPTSVER
DPETIKEFLTNDQYKLYKLIWSRFLASQMAAAVMDTTSMDIEGGDYLFRATGSIVKFPGF
MQVYIEENDDGTKEEEKLLPELAQGDKVEAKSLTPKQHFTQPPPRYTDATLVKVLEEKGI
GRPSTYAPIVETIQKRGYVVRENKQFYPTELGIIVVDLLKNYFPDIINIEFTAEMEEKLD
QIAEGDQDWVNVLKDFYGPFQQTLATAEEKIGKVQVADEVTDEICEQCGKNMVIKMGRFG
KFLACPGFPDCRNTKPLLEPTGVACPRCEGELVLRRSKKGRKFYGCSRYPECDFVTWDVP
TNEKCPHCGDLMVEKSSRGKEKILQCVNENCPSNAGVKETKAGQKTKQTTSNK
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtaccaatttgagtaaaacattagtaatcgtggaatctccggccaaggccaaa
agtatcggcaagtatttaggtagaaactatacggttaaagcttctatgggccatttgaga
gacttacctaaaagtcaatttggtgtggatgtggaaagtaatttttcccctaagtatatt
gctattagggggaagggggaaattatcaaagaactgcgagccgcagttaaaaaggccgat
cgcatcctgcttgcctccgacccggaccgggagggggaggctattgcctggcacttaagt
aagctgctggatattgatgaaaatagtaactgtcgcattgagttcaatgaaataactaaa
caagcgattcaacaggcagttaagcatcctcgccccatcgatatagaccgggttaacgcc
cagcaggcccgccgcatcttggaccgcctggtgggttacaatttgagcccgctgttatgg
cgtaaagtaaaaaaagggctgtcggccggtagagtacaatcggtggcagtgagattgatc
gttgaccgggaagaggagatcaaggcctttattcctgaggaatactggtctttaacggct
aaatttagtaagacagctaaatctacctttgaggccaaactttataaatatcaaaataaa
aagattaccatacccaatcaggaggccatggataaaattctggctgacctgaagggggtt
tcctacgttgttgccagcgttaccagaaaggaaaaacttcgtaacccggcaccgcctttc
accactagctccttacaacaagaggcttctagaaaattaaattttacagctcgtaaaaca
atggctgtggcccaacaactgtatgaaggactggaactgggtaaagaaggaccggtgggt
ttagtcacttatattcgtaccgattcaaccagggtttcggagacggcggtagaagaagcg
aaaaaatttattctggaaaggtttgggccggcctatgttcccaaggagtcccggcaaact
gtggccaagggcaaggtacaagatgcccacgaggccattcgacccacctcggtggaacgt
gatccggaaactattaaggaatttctaaccaatgatcaatacaaattatataaattaatt
tggtccagattcctggccagtcaaatggccgcagccgtaatggatacaaccagtatggat
attgagggcggtgattacctgtttcgggccaccggttctattgttaagttcccgggtttt
atgcaggtatacattgaggaaaatgatgacggcaccaaagaagaggaaaaattattgccc
gaactggctcaaggggacaaggtggaagcaaagtcactaacccccaagcaacactttact
caaccaccgccgcgctacaccgatgccacattagtcaaagtgttggaggaaaagggtatt
ggtaggcccagtacctacgcgccaattgtagaaactattcagaaacgtgggtacgtagtc
agggaaaacaaacaattttatccaaccgaactgggtataattgtagtagatctattgaag
aactattttccggatattattaatatagagttcaccgcagagatggaggaaaagctagac
caaattgctgagggtgaccaggattgggtaaatgttttgaaggatttctatggtcccttc
cagcaaacgctagcaacagcggaagaaaagattggcaaagttcaggtggcagacgaagtt
accgatgagatttgtgaacaatgcgggaaaaacatggttattaaaatggggcgttttggt
aaatttctggcttgtcctggttttcccgattgtcgcaacaccaaacctctgctggaacca
acgggggtagcctgtcccaggtgtgagggtgaattggtcctgcgccggagtaaaaaaggc
agaaagttttatggttgcagcaggtatccagagtgtgattttgttacctgggatgttccc
accaatgaaaaatgtccccactgcggagatttgatggtggaaaaaagtagtcggggtaaa
gaaaaaatactacaatgcgttaacgagaactgcccaagtaatgcaggagttaaagaaacc
aaagcgggccaaaagaccaagcaaacaaccagtaataaatag
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