Desulfotomaculum nigrificans: Desca_2014
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Entry
Desca_2014 CDS
T01498
Name
(GenBank) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
KO
K02945
small subunit ribosomal protein S1
K03527
4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:
1.17.7.4
]
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca00900
Terpenoid backbone biosynthesis
dca01100
Metabolic pathways
dca01110
Biosynthesis of secondary metabolites
dca03010
Ribosome
Module
dca_M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
Desca_2014
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
Desca_2014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
dca03011
]
Desca_2014
Enzymes [BR:
dca01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.7 With an iron-sulfur protein as acceptor
1.17.7.4 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
Desca_2014
Ribosome [BR:
dca03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
Desca_2014
Bacteria
Desca_2014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LYTB
S1
S1_RRP5
Spt6_S1
S1_2
PCB_OB
CsrA
Peptidase_S51
RNase_II_C_S1
Fe-ADH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AEF94853
UniProt:
F6B981
LinkDB
All DBs
Position
complement(2140064..2142067)
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AA seq
667 aa
AA seq
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MAGKAGFCYGVKRAIEMTLAAAAEEKGPIYTLGPLIHNPRVVQDLAQKGIKEINSLDQVD
GGTVIIRSHGVSPEVFRQAADKGIKIIDATCPFVGRAQKFAREMAEKGLPVYIVGDPGHP
EVQGILGWSGGKGIVIENADQISQVDHSKVGLVAQTTQPVANYQGVVEALKQQGVEVDAR
NTICLATGERQRAALELAKQVDVMVVVGGRESANTKKLAKICRESGTPTYHVESAAELQE
EWFRGVKTAGLTAGASTPDAIIEEVKRRMKELDQMTNGEEEMKDAMEVKSPQAGELIKGV
VVQVGPDEVMVDVGAKSEGVVPRKELACYEVDNPQDVVKVGDEIECMVVKAEDNEGKLIL
SKVRADAEKAWGSLEQAMENGTVIKGVVREVVKGGLIVDIGVRAFLPASLVDRGYVEDLS
KYLNQEVEVRVIEMNKQRKKVVVSRKAVLEEQYARKRAELLAGIQEGQTVKGIVRRLTNF
GAFVDLGGLDGLLHISEMSWYRINHPSEVVNVGDEIEVMVLKVDRENEKISLGRKQILPN
PWDNVEEKYPVGAVVKAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVAKPDEVVTEGE
EIDVKVLSVDPAEKRIRLSIREVNGEARPARENRSRKPENPEPNVEAPKEDNLTLGDVFG
DMFKDNK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
gtggccggtaaggcaggtttttgttacggcgtaaagcgggccatcgaaatgaccctagcc
gctgccgcagaggagaagggccctatttatacgctggggccgttaatccataatccccgg
gtggtacaagacctggcccaaaagggaattaaggagatcaacagcctggatcaggttgac
gggggcaccgtcattatcagatcccatggcgtgagtccggaagtattccgccaggctgcc
gacaaaggtataaaaataatagacgcaacctgtccctttgtgggcagggcacaaaaattt
gcccgtgaaatggccgaaaagggtctgcccgtttatatcgttggtgatccgggccacccg
gaggtacagggtatcctgggttggagcgggggcaaaggaatagtaattgaaaatgctgat
caaattagtcaggttgatcattccaaggtaggcctggtggcccaaacaacccagccggtc
gctaactaccagggagtggttgaagcccttaaacaacaaggagtcgaagttgacgcccgc
aacaccatttgtttggccacaggcgaacgccagcgagccgccttggagttagccaagcag
gtagatgtaatggtggtggtaggaggcagagaaagtgccaatactaaaaaattagccaag
atatgccgggaatcaggaactcccacctatcatgtggaatcagcagccgaactgcaggag
gaatggttccggggagtaaagacggcagggctgacagcgggtgcttcaacacctgacgca
attatagaggaggttaaaagaaggatgaaagagctggaccagatgaccaatggtgaagaa
gaaatgaaagatgccatggaggttaagtctccccaggccggcgaattaatcaagggcgtt
gtggtgcaggttggccctgacgaagtgatggtagatgtgggagcaaaatccgaaggtgtt
gtaccccgcaaagaactggcctgttatgaggtggataatccccaggacgtagtcaaggtg
ggggatgaaatagagtgcatggtggttaaagccgaagataatgaaggtaagttaattctc
tccaaggtgcgggccgatgctgaaaaggcctggggtagcctggagcaagccatggaaaat
ggcacagtcattaaaggtgtagtaagagaagtggttaaaggcggtctcatcgtagatatt
ggggtgcgtgccttcctgcctgcttccctggtggatcgtggttatgtggaagatctctcc
aaatacctgaaccaggaagttgaagtacgggttattgaaatgaacaagcagcggaagaaa
gttgtggtttcccgtaaagccgtactggaagaacaatatgcccgcaagcgcgcagaactg
ctggccggcatccaggagggccaaaccgttaaaggtattgttcgccgtttaaccaacttt
ggtgcctttgttgacctgggcggtctggatggcttattgcatatttccgaaatgagctgg
taccgcattaaccatccttccgaggtggttaatgtgggtgatgagatagaggtaatggta
ttgaaggtagaccgggaaaacgaaaagatttccctgggccggaaacaaattttgcccaac
ccctgggataacgtggaagaaaaataccctgtgggtgcggtggttaaagctaaagttgta
cgcctggctccctttggcgcctttgtccaactggaacccggcgtggaaggcctggtacac
atttctcacctggccgaccgccatgtagccaagccggatgaagtggtaaccgaaggcgaa
gaaattgacgttaaggtactgagcgttgacccggcagaaaaacgcattcgcctctccatc
cgcgaggtgaacggcgaagcacgtcccgcccgggaaaaccgttcccgcaagccagaaaac
cccgagcccaatgtggaagcacccaaagaagataacctgaccctcggtgacgtatttggg
gacatgtttaaagataacaagtaa
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