Desulfotomaculum nigrificans: Desca_2513
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Entry
Desca_2513 CDS
T01498
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
dca
Desulfotomaculum nigrificans
Pathway
dca02020
Two-component system
dca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Desca_2513
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Desca_2513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dca03021
]
Desca_2513
Transcription machinery [BR:
dca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Desca_2513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_3
HTH_23
HTH_Crp_2
HTH_38
Phage_CII
LacI
HTH_Tnp_Tc3_2
Motif
Other DBs
NCBI-ProteinID:
AEF95339
UniProt:
F6B4W7
LinkDB
All DBs
Position
complement(2646053..2647468)
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AA seq
471 aa
AA seq
DB search
MRMDFGLNLEQTQKLIMTPELRQAITVLQMSSMELTEYVEAQVLENPLLEMRDNDLERGE
ETGGQGDMVVEADKKDFDPDWLEYFEDRSDLGVSPGRGQREIAEQPNYEQFVSQAPTLTD
HLMFQLGLSKTAGDLRPVVEYLIGNVDARGYLAISLAEANQQLKVGLPKLEEALKVLQSF
DPPGVGGRDLQECLNIQLDLLGEDNPLVRILIADHLSDLAAGKLSKIAAKLNVSPQEIQE
AADILKKLEPKPGRNFSNANDTRYIIPDVVVEKVADQYVILVNDVAIPRLSINNTYRQVL
AKNSSADPDTKRFVEEKLNSAAWLIRSIEQRRLTLYKVANCLVELQRDFLDHGVKYLKPL
NLRKVADLIGVHESTVSRATSNKYIQTPQGVFEMKYFFSTGLSGASGTQVSAESLKKILQ
EIIQQEDPSAPLSDQKIAELFSQRGITISRRTITKYRDELGIPATNRRKRY
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcatggactttggtctaaatttagaacagacccaaaagttaataatgaccccggaa
ctacgccaggccatcactgtattgcagatgtcttctatggagctgactgaatatgtagag
gcccaggtattggaaaatcctctgctggaaatgcgggataatgacctggagcggggagaa
gaaaccggcggccagggagatatggtggttgaggcagataaaaaggattttgatcccgat
tggctggaatattttgaagaccggagtgatttgggggtaagtcccggtcgggggcaaagg
gaaattgcggagcagcccaattatgagcagtttgtcagtcaggcgcccactttaaccgat
cacctgatgtttcagctgggcttaagcaagacagccggggatttaaggccggtggttgaa
tatttaattggtaacgttgatgccaggggttacctggccatcagcctggccgaagccaac
cagcagttaaaggtgggtctccctaaattggaggaggctttaaaagtattgcaaagcttc
gatccgccgggggtgggcggccgggatctgcaggagtgtctcaatattcaactggatctg
ctgggggaagacaaccccctggtaagaatactgattgcggatcatttatctgacctggcc
gcaggtaagttatccaaaattgccgctaaactaaatgtttccccccaggagattcaagag
gctgctgatattttaaaaaaattggagcccaagcctggccgcaatttcagtaatgccaac
gatacccggtacattataccggatgtggtggtggaaaaagtggctgaccagtacgtcatc
ttagtcaatgatgtggccataccccgcctgtctattaacaatacttaccgccaggtattg
gctaaaaatagttccgctgacccggatacgaagcgctttgtggaggaaaaactaaactcg
gcggcctggctcattcgcagtatcgagcaacgtcggcttactttatataaagttgctaac
tgcctggtggagctgcagcgcgacttcttagatcacggggttaaatatctaaagcccctg
aacctcagaaaggtagcagacctgatcggagtgcatgagtccacggtcagccgagccacc
tccaataaatacatacagacaccccagggtgtctttgaaatgaagtatttcttctccacc
gggctcagcggcgccagcggcacgcaggtttccgccgaaagtttaaaaaagattttgcaa
gaaattattcagcaggaagacccgtccgctcccttaagtgaccagaaaatcgccgaattg
tttagccagaggggaatcaccatctcccgccggacgataaccaaataccgggatgaatta
ggtataccggctactaacaggaggaaaagatattag
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